Evidence map›Paper›PMID 25182222›Full record

ReviewHeredity2015

Exploiting the architecture and the features of the microsporidian genomes to investigate diversity and impact of these parasites on ecosystems.

E Peyretaillade, D Boucher, N Parisot, C Gasc, R Butler, J-F Pombert, E Lerat, P Peyret

Abstract readReview
In one paragraph

Review in Heredity, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Microsporidia, a Highly Adaptive Organism and Its Host Expansion to Humans.Frontiers in cellular and infection microbiology · 2022
    Review
  5. The compact genome ofMicrobial genomics · 2020
    Article
  6. Isolation ofJournal of parasitic diseases : official organ of the Indian Society for Parasitology · 2018
    Article
  7. Comparative genomics of microsporidian genomes reveals a minimal non-coding RNA set and new insights for transcription in minimal eukaryotic genomes.DNA research : an international journal for rapid publication of reports on genes and genomes · 2017
    Article
  8. Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

E PeyretailladeGenomics, Clermont Université, Université d'Auvergne, EA 4678 CIDAM, Clermont-Ferrand, France.
D BoucherGenomics, Clermont Université, Université d'Auvergne, EA 4678 CIDAM, Clermont-Ferrand, France.
N Parisot1] Genomics, Clermont Université, Université d'Auvergne, EA 4678 CIDAM, Clermont-Ferrand, France [2] CNRS, UMR 6023, LMGE, Aubière, France.
C GascGenomics, Clermont Université, Université d'Auvergne, EA 4678 CIDAM, Clermont-Ferrand, France.
R ButlerIllinois Institute of Technology, BCHS Biology Division, Chicago, IL, USA.
J-F PombertIllinois Institute of Technology, BCHS Biology Division, Chicago, IL, USA.
E LeratUniversité de Lyon, Lyon, Université Lyon 1, CNRS, UMR 5558, Laboratoire de Biométrie et Biologie Évolutive, Villeurbanne, France.
P PeyretGenomics, Clermont Université, Université d'Auvergne, EA 4678 CIDAM, Clermont-Ferrand, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fungal species play extremely important roles in ecosystems. Clustered at the base of the fungal kingdom are Microsporidia, a group of obligate intracellular eukaryotes infecting multiple animal lineages. Because of their large host spectrum and their implications in host population regulation, they influence food webs, and accordingly, ecosystem structure and function. Unfortunately, their ecological role is not well understood. Present also as highly resistant spores in the environment, their characterisation requires special attention. Different techniques based on direct isolation and/or molecular approaches can be considered to elucidate their role in the ecosystems, but integrating environmental and genomic data (for example, genome architecture, core genome, transcriptional and translational signals) is crucial to better understand the diversity and adaptive capacities of Microsporidia. Here, we review the current status of Microsporidia in trophic networks; the various genomics tools that could be used to ensure identification and evaluate diversity and abundance of these organisms; and how these tools could be used to explore the microsporidian life cycle in different environments. Our understanding of the evolution of these widespread parasites is currently impaired by limited sampling, and we have no doubt witnessed but a small subset of their diversity.

Indexed as

BiodiversityGenome, FungalAnimalsDNA Transposable ElementsEcosystemGenomicsInsectaMicrosporidiaDNA Transposable Elements

Identifiers

PMID25182222
PMCPMC4815508

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.