Evidence map›Paper›PMID 25182153›Full record

ArticleCancer discovery2014

L-2-Hydroxyglutarate: an epigenetic modifier and putative oncometabolite in renal cancer.

Eun-Hee Shim, Carolina B Livi, Dinesh Rakheja, Jubilee Tan, Daniel Benson, Vishwas Parekh, Eun-Young Kho, Arindam P Ghosh, Richard Kirkman, Sadanan Velu and 11 more

Open access · greenAbstract read
In one paragraph

Article in Cancer discovery, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 179 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
179citing papers in PubMed, 1 pooled it
8.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

179 citing papers in PubMed, 1 synthesis or guideline pooled it, 289 citations in OpenAlex.

  1. Pooled it
  2. Aspirin Reduces Plasma Concentrations of the Oncometabolite 2-Hydroxyglutarate: Results of a Randomized, Double-Blind, Crossover Trial.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2016
    Trial
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Review
  11. Article
  12. Hypoxia-inducible factors drive miRNA-mediated downregulation ofbioRxiv : the preprint server for biology · 2025
    Article
  13. Review
  14. Restoring mitochondrial quantity and quality to reverse the Warburg effect and drive neuroblastoma differentiation.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  15. Review
  16. Review
  17. Review
  18. Metabolic Responses to Redox Stress in Vascular Cells.Antioxidants & redox signaling · 2024
    Review
  19. Article
  20. Article

119 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 3 institutions in 1 country.

Eun-Hee ShimDepartment of Urology, University of Alabama at Birmingham, Birmingham, Alabama.
Carolina B LiviDepartment of Molecular Medicine, University of Texas Health Sciences Center at San Antonio, San Antonio, Texas.
Dinesh RakhejaDepartment of Pathology, University of Texas Southwestern Medical Center, Dallas, Texas.
Jubilee TanDepartment of Urology, University of Alabama at Birmingham, Birmingham, Alabama.
Daniel BensonDepartment of Urology, University of Alabama at Birmingham, Birmingham, Alabama.
Vishwas ParekhDepartment of Pathology, University of Alabama at Birmingham, Birmingham, Alabama.
Eun-Young KhoDepartment of Urology, University of Alabama at Birmingham, Birmingham, Alabama.
Arindam P GhoshDepartment of Urology, University of Alabama at Birmingham, Birmingham, Alabama.
Richard KirkmanDepartment of Urology, University of Alabama at Birmingham, Birmingham, Alabama.
Sadanan VeluDepartment of Chemistry, University of Alabama at Birmingham, Birmingham, Alabama.
Shilpa DuttaDepartment of Chemistry, University of Alabama at Birmingham, Birmingham, Alabama.
Balachandra ChennaDepartment of Chemistry, University of Alabama at Birmingham, Birmingham, Alabama.
Shane L ReaDepartment of Physiology, University of Texas Health Sciences Center at San Antonio, San Antonio, Texas.
Robert J MishurDepartment of Physiology, University of Texas Health Sciences Center at San Antonio, San Antonio, Texas.
Qiuhua LiDepartment of Urology, University of Texas Health Sciences Center at San Antonio, San Antonio, Texas.
Teresa L Johnson-PaisDepartment of Urology, University of Texas Health Sciences Center at San Antonio, San Antonio, Texas.
Lining GuoMetabolon, Durham, North Carolina.
Sejong BaeDepartment of Medicine, University of Alabama at Birmingham, Birmingham, Alabama.
Shi WeiDepartment of Pathology, University of Alabama at Birmingham, Birmingham, Alabama.
Karen BlockDepartment of Medicine, University of Texas Health Sciences Center at San Antonio, San Antonio, Texas. Audie L. Murphy Veterans Hospital, San Antonio, Texas.
Sunil SudarshanDepartment of Urology, University of Alabama at Birmingham, Birmingham, Alabama. sudarshan@uab.edu.
University of Alabama at Birmingham · USMetabolon (United States) · USThe University of Texas Southwestern Medical Center · US

Funding

XRAY CRYSTALLOGRAPHYP30CA013148 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI MICHAEL JAMES BERTRAM · 1985 to 2026
$165.9M
TISSUE CULTURE---COREP30CA054174 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI DARUKA MAHADEVAN · 1991 to 2026
$59.1M
INSTITUTE FOR INTEGRATION OF MEDICINE & SCIENCE: A PARTNERSHIP TO IMPROVE HEALTHUL1RR025767 · NCRR · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI CLARK, ROBERT A · 2008 to 2011
$23.8M
Institute for Integration of Medicine & Science: A Partnership to Improve HealthUL1TR001120 · NCATS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI CLARK, ROBERT A, HARGREAVES, KENNETH M · 2013 to 2017
$16.5M
Institute for Integration of Medicine & Science: A Partnership to Improve HealthKL2TR001118 · NCATS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI CLARK, ROBERT A, DOUGHERTY, DONALD M · 2013 to 2017
$3.4M
Mechanisms of Renal CarcinogenesisR01CA131272 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI BLOCK, KAREN · 2008 to 2011
$907k
Role of fumarate hydratase in renal hypoxia and tumorigenesisK08CA138774 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI SUDARSHAN, SUNIL · 2009 to 2013
$864k
NCATS NIH HHS KL2 TR001118NCATS NIH HHS UL1 TR001120NCI NIH HHS K08 CA138774NCI NIH HHS P30 CA013148NCI NIH HHS P30 CA054174NCI NIH HHS R01 CA131272NCI NIH HHS R01 NCI CA131272NCRR NIH HHS UL1 RR025767NCRR NIH HHS UL1RR025767
6 · The paper itself

Abstract

unlabelledThrough unbiased metabolomics, we identified elevations of the metabolite 2-hydroxyglutarate (2HG) in renal cell carcinoma (RCC). 2HG can inhibit 2-oxoglutaratre (2-OG)-dependent dioxygenases that mediate epigenetic events, including DNA and histone demethylation. 2HG accumulation, specifically the d enantiomer, can result from gain-of-function mutations of isocitrate dehydrogenase (IDH1, IDH2) found in several different tumors. In contrast, kidney tumors demonstrate elevations of the l enantiomer of 2HG (l-2HG). High-2HG tumors demonstrate reduced DNA levels of 5-hydroxymethylcytosine (5hmC), consistent with 2HG-mediated inhibition of ten-eleven translocation (TET) enzymes, which convert 5-methylcytosine (5mC) to 5hmC. l-2HG elevation is mediated in part by reduced expression of l-2HG dehydrogenase (L2HGDH). L2HGDH reconstitution in RCC cells lowers l-2HG and promotes 5hmC accumulation. In addition, L2HGDH expression in RCC cells reduces histone methylation and suppresses in vitro tumor phenotypes. Our report identifies l-2HG as an epigenetic modifier and putative oncometabolite in kidney cancer. SIGNIFICANCE: Here, we report elevations of the putative oncometabolite l-2HG in the most common subtype of kidney cancer and describe a novel mechanism for the regulation of DNA 5hmC levels. Our findings provide new insight into the metabolic basis for the epigenetic landscape of renal cancer.

Indexed as

Carcinoma, Renal CellCell Line, TumorEpigenesis, GeneticGlutaratesHEK293 CellsHumansKidney NeoplasmsRNA, Messengeralpha-hydroxyglutarateGlutaratesRNA, Messenger

Identifiers

PMID25182153
PMCPMC4286872
OpenAlexW1984882020

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.