Evidence map›Paper›PMID 25181303›Full record

ReviewCurrent protocols in cell biology2014

Best practices for mapping replication origins in eukaryotic chromosomes.

Emilie Besnard, Romain Desprat, Michael Ryan, Malik Kahli, Mirit I Aladjem, Jean-Marc Lemaitre

Open access · greenAbstract readReview
In one paragraph

Review in Current protocols in cell biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 2 countries.

Emilie BesnardLaboratory of Genome Plasticity and Aging, Institute of Functional Genomics, CNRS UMR5203, INSERM U661, UMI, Montpellier, France.
Romain Desprat
Michael Ryan
Malik Kahli
Mirit I Aladjem
Jean-Marc Lemaitre
Institute for Regenerative Medicine & Biotherapy · FRCentre National de la Recherche Scientifique · FRInserm · FRInsilicos (United States) · USNational Cancer Institute · US

Funding

Initiation of DNA Replication in Mammalian CellsZIABC010411 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI ALADJEM, MIRIT · 2009 to 2025
$25.0M
INITIATION OF DNA REPLICATION IN MAMMALIAN CELLSZ01BC010411 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI ALADJEM, MIRIT · 2000 to 2008
$1.8M
Intramural NIH HHS Z01 BC010411
6 · The paper itself

Abstract

Understanding the regulatory principles ensuring complete DNA replication in each cell division is critical for deciphering the mechanisms that maintain genomic stability. Recent advances in genome sequencing technology facilitated complete mapping of DNA replication sites and helped move the field from observing replication patterns at a handful of single loci to analyzing replication patterns genome-wide. These advances address issues, such as the relationship between replication initiation events, transcription, and chromatin modifications, and identify potential replication origin consensus sequences. This unit summarizes the technological and fundamental aspects of replication profiling and briefly discusses novel insights emerging from mining large datasets, published in the last 3 years, and also describes DNA replication dynamics on a whole-genome scale.

Indexed as

ChromosomesChromosome MappingDNA ReplicationEukaryotic CellsReplication OriginbioinformaticsDNA replicationnext-generation sequencing (NGS)originsreplication timing

Identifiers

PMID25181303
PMCPMC6608574
OpenAlexW1552044753

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.