Evidence map›Paper›PMID 25181289›Full record

ArticlePloS one2014

Uncoupling different characteristics of the C. elegans E lineage from differentiation of intestinal markers.

Scott M Robertson, Jessica Medina, Rueyling Lin

Abstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Evolutionary Change in Gut Specification inJournal of developmental biology · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Scott M RobertsonDepartment of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America.
Jessica MedinaDepartment of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America.
Rueyling LinDepartment of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America.

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
Transcriptional Regulation by the Wnt Effector POP-1R01HD037933 · NICHD · UT SOUTHWESTERN MEDICAL CENTER · PI LIN, RUEYLING · 2000 to 2014
$4.5M
REPROGRAMMING BY mRNA CLEARANCE: THE MAT-TO-ZYG TRANSITIONR01GM084198 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI LIN, RUEYLING, ZHANG, MICHAEL Q · 2009 to 2018
$2.8M
NICHD NIH HHS R01 HD037933NICHD NIH HHS R01HD037933NIGMS NIH HHS R01 GM084198NIGMS NIH HHS R01GM084198NIH HHS P40 OD010440
6 · The paper itself

Abstract

In the 4-cell C. elegans embryo, a signal from P2 to its anterior sister, EMS, specifies the posterior daughter of EMS, E, as the sole founder cell for intestine. The P2-to-EMS signal restricts high level zygotic expression of the redundant GATA transcription factors, END-1 and END-3, to only the E lineage. Expression of END-1 or END-3 in early blastomeres is sufficient to drive intestinal differentiation. We show here that a number of E lineage characteristics, which are also regulated through P2-EMS signaling, can be uncoupled from intestine development, and each with a different sensitivity to specific perturbations of the P2-EMS signal. For example, we show that the extended cell cycle in Ea and Ep depends on the P2-induced high level expression of the cell cycle regulator, WEE-1.1, in E. A mutation in wee-1.1 results in shortened Ea and Ep cell cycles, but has no effect upon intestinal differentiation or embryogenesis. Furthermore, it has been shown previously that the total number of E lineage cell divisions is regulated by a mechanism dependent upon E being specified as the intestinal founder cell. We now show, however, that cell division counting can be uncoupled from intestine differentiation in the E lineage. Many mutations in P2-EMS signal genes exhibit nonfully-penetrant defects in intestinal differentiation. When embryos with those mutations generate intestinal cells, they often make too many intestinal cells. In addition, at the level of individual embryos, expression of end-1 and end-3, and another very early E-specific zygotic gene, sdz-23, exhibit stochastic and discordant defects in P2-EMS signaling mutants. We show here that sdz-23 is expressed close to wildtype levels in embryos deleted of both end-1 and end-3. sdz-23 does not appear to function in intestine development, raising the intriguing possibility that the P2-EMS interaction has downstream molecular consequences within the E lineage independent of end-1/3 and intestinal development.

Indexed as

Cell DifferentiationCell LineageAnimalsBiomarkersBlastomeresCaenorhabditis elegansCell CycleCell DivisionCytoplasmic GranulesEmbryo, NonmammalianGene Expression Regulation, DevelopmentalGenes, HelminthGenes, ReporterGreen Fluorescent ProteinsIntestinesMAP Kinase Signaling SystemBiomarkersGreen Fluorescent ProteinsWnt Proteins

Identifiers

PMID25181289
PMCPMC4152275

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.