Evidence map›Paper›PMID 25180973›Full record

ArticlePloS one2014

Glycosylation variants of a β-glucosidase secreted by a Taiwanese fungus, Chaetomella raphigera, exhibit variant-specific catalytic and biochemical properties.

Aki Yoneda, Hsion-Wen David Kuo, Mayumi Ishihara, Parastoo Azadi, Su-May Yu, Tuan-hua David Ho

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 10 citations in OpenAlex.

  1. Improving recombinant protein secretion inMetabolic engineering communications · 2025
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  2. Article
  3. Biotechnology for biofuels · 2019
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Aki YonedaDepartment of Biology, Washington University in St. Louis, St. Louis, Missouri, United States of America; Department of Pathology and Immunology, School of Medicine, Washington University in St. Louis, St. Louis, Missouri, United States of America.
Hsion-Wen David KuoDepartment of Environmental Science and Engineering, Tunghai University, Taichung, Taiwan, Republic of China.
Mayumi IshiharaComplex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States of America.
Parastoo AzadiComplex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States of America.
Su-May YuInstitute of Molecular Biology, Academia Sinica, Nankang, Taipei, Taiwan, Republic of China; Agricultural Biotechnology Center, National Chung-Hsing University, Taichung, Taiwan, Republic of China; Department of Life Sciences, National Chung-Hsing University, Taichung, Taiwan, Republic of China.
Tuan-hua David HoDepartment of Biology, Washington University in St. Louis, St. Louis, Missouri, United States of America; Agricultural Biotechnology Center, National Chung-Hsing University, Taichung, Taiwan, Republic of China; Department of Life Sciences, National Chung-Hsing University, Taichung, Taiwan, Republic of China; Institute of Plant and Microbial Biology, Academia Sinica, Nankang, Taipei, Taiwan, Republic of China.
University of Georgia · USWashington University in St. Louis · USInstitute of Molecular Biology, Academia Sinica · TWTunghai University · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cellulosic biomass is an abundant and promising energy source. To make cellulosic biofuels competitive against conventional fuels, conversion of rigid plant materials into sugars must become efficient and cost-effective. During cellulose degradation, cellulolytic enzymes generate cellobiose (β-(1→4)-glucose dimer) molecules, which in turn inhibit such enzymes by negative feedback. β-Glucosidases (BGLs) cleave cellobiose into glucose monomers, assisting overall cellulolytic activities. Therefore, BGLs are essential for efficient conversion of cellulosic biomass into biofuels, and it is important to characterize newly isolated BGLs for useful traits. Here, we report our discovery that the indigenous Taiwanese fungus Chaetomella raphigera strain D2 produces two molecular weight variants of a single BGL, D2-BGL (shortened to "D2"), which differ in O-glycosylation. The more extensively O-glycosylated form of native D2 (nD2L) has increased activity toward the natural substrate, cellobiose, compared to the less O-glycosylated form (nD2S). nD2L is more stable at 60°C, in acidic pH, and in the presence of the ionic detergent sodium dodecyl sulfate than nD2S. Furthermore, unlike nD2S, nD2L does not display substrate inhibition by an artificial substrate p-nitrophenyl glucopyranoside (pNPG), and the glucose feedback inhibition kinetics of nD2L is competitive (while it is non-competitive for nD2S), suggesting that these two glycovariants of D2 bind substrates differently. Interestingly, D2 produced in a heterologous system, Pichia pastoris, closely mimics properties of nD2S. Our studies suggest that O-glycosylation of D2 is important in determining its catalytic and biochemical properties.

Indexed as

BiocatalysisAmino Acid SequenceAscomycotaBase Sequencebeta-GlucosidaseCellobioseChromatography, GelFungal ProteinsGenes, FungalGlucoseGlycosylationHydrogen-Ion ConcentrationIsoenzymesKineticsMolecular Sequence DataPolysaccharidesbeta-GlucosidaseCellobioseFungal ProteinsGlucoseIsoenzymesPolysaccharidesSodium Dodecyl Sulfate

Identifiers

PMID25180973
PMCPMC4152272
OpenAlexW2130891490

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.