Evidence map›Paper›PMID 25180972›Full record

ArticlePloS one2014

Amino acid supplementation affects imprinted gene transcription patterns in parthenogenetic porcine blastocysts.

Chi-Hun Park, Young-Hee Jeong, Yeun-Ik Jeong, Jeong-Woo Kwon, Taeyoung Shin, Sang-Hwan Hyun, Eui-Bae Jeung, Nam-Hyung Kim, Sang-Kyo Seo, Chang-Kyu Lee and 1 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Chi-Hun ParkSooam Biotech Research Foundation, Seoul, Republic of Korea.
Young-Hee JeongSooam Biotech Research Foundation, Seoul, Republic of Korea.
Yeun-Ik JeongSooam Biotech Research Foundation, Seoul, Republic of Korea.
Jeong-Woo KwonDepartment of Animal Sciences, College of Veterinary Medicine, Chungbuk National University, Cheongju, Chungbuk, Republic of Korea.
Taeyoung ShinSooam Biotech Research Foundation, Seoul, Republic of Korea.
Sang-Hwan HyunCollege of Veterinary Medicine, College of Veterinary Medicine, Chungbuk National University, Cheongju, Chungbuk, Republic of Korea.
Eui-Bae JeungCollege of Veterinary Medicine, College of Veterinary Medicine, Chungbuk National University, Cheongju, Chungbuk, Republic of Korea.
Nam-Hyung KimDepartment of Animal Sciences, College of Veterinary Medicine, Chungbuk National University, Cheongju, Chungbuk, Republic of Korea.
Sang-Kyo SeoAnimal Quarantine Division, Gyeonggi-Do, Suwon, Republic of Korea.
Chang-Kyu LeeDepartment of Agricultural Biotechnology, Animal Biotechnology Major, and Research Institute for Agriculture and Life Science, Seoul National University, Seoul, Republic of Korea.
Woo-Suk HwangSooam Biotech Research Foundation, Seoul, Republic of Korea.
Chungbuk National University · KRAnimal and Plant Quarantine Agency · KRSeoul National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To determine whether exogenous amino acids affect gene transcription patterns in parthenogenetic porcine embryos, we investigated the effects of amino acid mixtures in culture medium. Parthenogenetic embryos were cultured in PZM3 medium under four experimental conditions: 1) control (no amino acids except L-glutamine and taurine); 2) nonessential amino acids (NEAA); 3) essential amino acids (EAA); and 4) NEAA and EAA. The rate of development of embryos to the four-cell stage was not affected by treatment. However, fewer (P<0.05) embryos cultured with EAA (12.8%) reached the blastocyst stage as compared with the control group (25.6%) and NEAA group (30.3%). Based on these findings, we identified genes with altered expression in parthenogenetic embryos exposed to medium with or without EAAs. The results indicated that EAA influenced gene expression patterns, particularly those of imprinted genes (e.g., H19, IGF2R, PEG1, XIST). However, NEAAs did not affect impaired imprinted gene expressions induced by EAA. The results also showed that mechanistic target of rapamycin (MTOR) mRNA expression was significantly increased by EAA alone as compared with control cultures, and that the combined treatment with NEAA and EAA did not differ significantly from those of control cultures. Our results revealed that gene transcription levels in porcine embryos changed differentially depending on the presence of EAA or NEAA. However, the changes in the H19 mRNA observed in the parthenogenetic blastocysts expression level was not related to the DNA methylation status in the IGF2/H19 domain. The addition of exogenous amino acid mixtures affected not only early embryonic development, but also gene transcription levels, particularly those of imprinted genes. However, this study did not reveal how amino acids affect expression of imprinted genes under the culture conditions used. Further studies are thus required to fully evaluate how amino acids affect transcriptional regulation in porcine embryos.

Indexed as

Amino AcidsAmino Acids, EssentialAnimalsBlastocystCulture MediaDNA MethylationEmbryonic DevelopmentFemaleGene Expression Regulation, DevelopmentalGenomic ImprintingParthenogenesisRNA, Long NoncodingRNA, MessengerSus scrofaTOR Serine-Threonine KinasesTranscription, GeneticAmino AcidsAmino Acids, EssentialCulture MediaH19 long non-coding RNARNA, Long NoncodingRNA, MessengerTOR Serine-Threonine Kinases

Identifiers

PMID25180972
PMCPMC4152337
OpenAlexW2076459981

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.