Evidence map›Paper›PMID 25180232›Full record

ArticleThe EMBO journal2014

Akirin specifies NF-κB selectivity of Drosophila innate immune response via chromatin remodeling.

François Bonnay, Xuan-Hung Nguyen, Eva Cohen-Berros, Laurent Troxler, Eric Batsche, Jacques Camonis, Osamu Takeuchi, Jean-Marc Reichhart, Nicolas Matt

Abstract read
In one paragraph

Article in The EMBO journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 101 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

François BonnayUPR9022 du CNRS, Institut de Biologie Moléculaire et Cellulaire Université de Strasbourg, Strasbourg Cedex, France.
Xuan-Hung NguyenUPR9022 du CNRS, Institut de Biologie Moléculaire et Cellulaire Université de Strasbourg, Strasbourg Cedex, France.
Eva Cohen-BerrosUPR9022 du CNRS, Institut de Biologie Moléculaire et Cellulaire Université de Strasbourg, Strasbourg Cedex, France.
Laurent TroxlerUPR9022 du CNRS, Institut de Biologie Moléculaire et Cellulaire Université de Strasbourg, Strasbourg Cedex, France.
Eric BatscheDépartement de Biologie du Développement, Institut Pasteur, CNRS URA2578, Unité de Régulation Epigénétique, Paris, France.
Jacques CamonisInstitut Curie INSERM U-528, Paris Cedex, France.
Osamu TakeuchiLaboratory of Infection and Prevention, Institute for Virus Research Kyoto University CREST, JST, Sakyo-ku, Kyoto, Japan.
Jean-Marc ReichhartUPR9022 du CNRS, Institut de Biologie Moléculaire et Cellulaire Université de Strasbourg, Strasbourg Cedex, France.
Nicolas MattUPR9022 du CNRS, Institut de Biologie Moléculaire et Cellulaire Université de Strasbourg, Strasbourg Cedex, France n.matt@unistra.fr.
Université de Strasbourg · FRInstitut de Biologie Moléculaire et Cellulaire · FRInstitut Curie · FRInstitut Pasteur · FRKyoto University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The network of NF-κB-dependent transcription that activates both pro- and anti-inflammatory genes in mammals is still unclear. As NF-κB factors are evolutionarily conserved, we used Drosophila to understand this network. The NF-κB transcription factor Relish activates effector gene expression following Gram-negative bacterial immune challenge. Here, we show, using a genome-wide approach, that the conserved nuclear protein Akirin is a NF-κB co-factor required for the activation of a subset of Relish-dependent genes correlating with the presence of H3K4ac epigenetic marks. A large-scale unbiased proteomic analysis revealed that Akirin orchestrates NF-κB transcriptional selectivity through the recruitment of the Osa-containing-SWI/SNF-like Brahma complex (BAP). Immune challenge in Drosophila shows that Akirin is required for the transcription of a subset of effector genes, but dispensable for the transcription of genes that are negative regulators of the innate immune response. Therefore, Akirins act as molecular selectors specifying the choice between subsets of NF-κB target genes. The discovery of this mechanism, conserved in mammals, paves the way for the establishment of more specific and less toxic anti-inflammatory drugs targeting pro-inflammatory genes.

Indexed as

Chromatin Assembly and DisassemblyImmunity, InnateAnimalsCell Cycle ProteinsDNA-Binding ProteinsDrosophilaDrosophila ProteinsFemaleMaleMutationNF-kappa BNuclear ProteinsPromoter Regions, GeneticProteomicsTrans-ActivatorsTranscriptional Activationakirin protein, DrosophilaBap60 protein, Drosophilabrm protein, DrosophilaCell Cycle ProteinsDNA-Binding ProteinsDrosophila ProteinsNF-kappa BNuclear Proteinsosa protein, DrosophilaRel protein, DrosophilaTrans-ActivatorsTranscription FactorsChromatin remodelingDrosophilaInnate immune responseNF‐κB

Identifiers

PMID25180232
PMCPMC4253524
OpenAlexW2169122685

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.