Evidence map›Paper›PMID 25180101›Full record

ArticleeLife2014

Common intermediates and kinetics, but different energetics, in the assembly of SNARE proteins.

Sylvain Zorman, Aleksander A Rebane, Lu Ma, Guangcan Yang, Matthew A Molski, Jeff Coleman, Frederic Pincet, James E Rothman, Yongli Zhang

Abstract read
In one paragraph

Article in eLife, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. SNARE Proteins in Synaptic Vesicle Fusion.Advances in neurobiology · 2023
    Article
  5. A dynamic template complex mediates Munc18-chaperoned SNARE assembly.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  6. Review
  7. Review
  8. Article
  9. Energetics, kinetics, and pathways of SNARE assembly in membrane fusion.Critical reviews in biochemistry and molecular biology · 2022
    Review
  10. Article
  11. Article
  12. Review
  13. Quantitative Models of Lipid Transfer and Membrane Contact Formation.Contact (Thousand Oaks (Ventura County, Calif.)) · 2022
    Article
  14. Chaperoning SNARE Folding and Assembly.Annual review of biochemistry · 2021
    Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Energetic dependencies dictate folding mechanism in a complex protein.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Sylvain ZormanDepartment of Cell Biology, Yale University School of Medicine, New Haven, United States.
Aleksander A RebaneDepartment of Physics, Yale University, New Haven, United States.
Lu MaDepartment of Cell Biology, Yale University School of Medicine, New Haven, United States.
Guangcan YangDepartment of Cell Biology, Yale University School of Medicine, New Haven, United States.
Matthew A MolskiDepartment of Cell Biology, Yale University School of Medicine, New Haven, United States.
Jeff ColemanDepartment of Cell Biology, Yale University School of Medicine, New Haven, United States.
Frederic PincetDepartment of Cell Biology, Yale University School of Medicine, New Haven, United States.
James E RothmanDepartment of Cell Biology, Yale University School of Medicine, New Haven, United States.
Yongli ZhangDepartment of Cell Biology, Yale University School of Medicine, New Haven, United States.

Funding

Regulation of Membrane Fusion in ExocytosisR01DK027044 · NIDDK · YALE UNIVERSITY · PI KRISHNAKUMAR, SHYAM S · 1986 to 2021
$8.2M
MECHANISMS OF INTRACELLULAR MEMBRANE FUSIONR37DK027044 · NIDDK · YALE UNIVERSITY · PI ROTHMAN, JAMES · 1992 to 2012
$5.3M
Single-molecule manipulation of SNAREsR01GM093341 · NIGMS · YALE UNIVERSITY · PI ZHANG, YONGLI · 2010 to 2018
$3.1M
NIDDK NIH HHS DK027044NIDDK NIH HHS R01 DK027044NIDDK NIH HHS R37 DK027044NIGMS NIH HHS GM093341NIGMS NIH HHS R01 GM093341
6 · The paper itself

Abstract

Soluble N-ethylmaleimide-sensitive factor attachment protein receptors (SNAREs) are evolutionarily conserved machines that couple their folding/assembly to membrane fusion. However, it is unclear how these processes are regulated and function. To determine these mechanisms, we characterized the folding energy and kinetics of four representative SNARE complexes at a single-molecule level using high-resolution optical tweezers. We found that all SNARE complexes assemble by the same step-wise zippering mechanism: slow N-terminal domain (NTD) association, a pause in a force-dependent half-zippered intermediate, and fast C-terminal domain (CTD) zippering. The energy release from CTD zippering differs for yeast (13 kBT) and neuronal SNARE complexes (27 kBT), and is concentrated at the C-terminal part of CTD zippering. Thus, SNARE complexes share a conserved zippering pathway and polarized energy release to efficiently drive membrane fusion, but generate different amounts of zippering energy to regulate fusion kinetics.

Indexed as

Protein FoldingProtein Structure, SecondaryAmino Acid SequenceAnimalsEnergy TransferHumansKineticsModels, MolecularMolecular Sequence DataMultiprotein ComplexesOptical TweezersProtein Structure, QuaternaryQa-SNARE ProteinsRatsSequence Homology, Amino AcidSNARE ProteinsMultiprotein ComplexesQa-SNARE ProteinsSnap23 protein, ratSNARE ProteinsVesicle-Associated Membrane Protein 2Vesicular Transport Proteinsbiophysicscell biologyE. colienergy landscapemembrane fusionoptical tweezersprotein foldingSNARE assemblySNAREsstructural biology

Identifiers

PMID25180101
PMCPMC4166003

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.