Evidence map›Paper›PMID 25179629›Full record

ArticleThe Journal of cell biology2014

Cis-acting DNA sequence at a replication origin promotes repeat expansion to fragile X full mutation.

Jeannine Gerhardt, Nikica Zaninovic, Qiansheng Zhan, Advaitha Madireddy, Sarah L Nolin, Nicole Ersalesi, Zi Yan, Zev Rosenwaks, Carl L Schildkraut

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
4.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 49 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Mechanisms of theInternational journal of molecular sciences · 2022
    Review
  5. Article
  6. Observational
  7. Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. The G-rich Repeats inGenetics · 2018
    Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Jeannine GerhardtDepartment of Cell Biology, Albert Einstein College of Medicine, Bronx, NY 10461 jeannine.gerhardt@gmail.com carl.schildkraut@einstein.yu.edu.
Nikica ZaninovicCenter for Reproductive Medicine and Infertility, Weill Cornell Medical College, New York, NY 10021.
Qiansheng ZhanCenter for Reproductive Medicine and Infertility, Weill Cornell Medical College, New York, NY 10021.
Advaitha MadireddyDepartment of Cell Biology, Albert Einstein College of Medicine, Bronx, NY 10461.
Sarah L NolinNew York State Institute for Basic Research in Developmental Disabilities, Staten Island, NY 10314.
Nicole ErsalesiNew York State Institute for Basic Research in Developmental Disabilities, Staten Island, NY 10314.
Zi YanDepartment of Cell Biology, Albert Einstein College of Medicine, Bronx, NY 10461.
Zev RosenwaksCenter for Reproductive Medicine and Infertility, Weill Cornell Medical College, New York, NY 10021.
Carl L SchildkrautDepartment of Cell Biology, Albert Einstein College of Medicine, Bronx, NY 10461 jeannine.gerhardt@gmail.com carl.schildkraut@einstein.yu.edu.
Albert Einstein College of Medicine · USCornell University · USNew York State Office for People With Developmental Disabilities · US

Funding

DNA REPLICATION INITIATION SITES IN MAMMALIAN CELLSR01GM045751 · NIGMS · YESHIVA UNIVERSITY · PI SCHILDKRAUT, CARL L · 1992 to 2023
$13.4M
Translational Neuroimaging CoreP30HD071593 · NICHD · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI WALKLEY, STEVEN UPSHAW · 2011 to 2015
$5.6M
NICHD NIH HHS P30 HD071593NIGMS NIH HHS 5R01-GM045751NIGMS NIH HHS R01 GM045751
6 · The paper itself

Abstract

Fragile X syndrome (FXS) is caused by CGG repeat expansion that leads to FMR1 silencing. Women with a premutation allele are at risk of having a full mutation child with FXS. To investigate the mechanism of repeat expansion, we examined the relationship between a single-nucleotide polymorphism (SNP) variant that is linked to repeat expansion in haplogroup D and a replication origin located ∼53 kb upstream of the repeats. This origin is absent in FXS human embryonic stem cells (hESCs), which have the SNP variant C, but present in the nonaffected hESCs, which have a T variant. The SNP maps directly within the replication origin. Interestingly, premutation hESCs have a replication origin and the T variant similar to nonaffected hESCs. These results suggest that a T/C SNP located at a replication origin could contribute to the inactivation of this replication origin in FXS hESCs, leading to altered replication fork progression through the repeats, which could result in repeat expansion to the FXS full mutation.

Indexed as

Replication OriginTrinucleotide Repeat ExpansionAnimalsBase SequenceCells, CulturedDNA MethylationDNA ReplicationEmbryonic Stem CellsFemaleFibroblastsFragile X SyndromeHumansMiceMice, Inbred NODMice, SCIDMutation

Identifiers

PMID25179629
PMCPMC4151148
OpenAlexW2008972787

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.