Evidence map›Paper›PMID 25177858›Full record

ArticleBiomolecules2014

Differential expression of 26S proteasome subunits and functional activity during neonatal development.

Erika C Claud, Julie A K McDonald, Shu-Mei He, Yueyue Yu, Lily Duong, Jun Sun, Elaine O Petrof

Open access · goldAbstract read
In one paragraph

Article in Biomolecules, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact, top 91% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Ubiquitin-proteasome signaling in lung injury.Translational research : the journal of laboratory and clinical medicine · 2018
    Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Erika C ClaudDepartments of Pediatrics and Medicine, University of Chicago, Chicago, IL 60611, USA. eclaud@peds.bsd.uchicago.edu.
Julie A K McDonaldGastrointestinal Diseases Research Unit, Department of Medicine, Queen's University, Kingston, ON K7L 2V7, Canada. jm13@queensu.ca.
Shu-Mei HeGastrointestinal Diseases Research Unit, Department of Medicine, Queen's University, Kingston, ON K7L 2V7, Canada. smh6@queensu.ca.
Yueyue YuDepartments of Pediatrics and Medicine, University of Chicago, Chicago, IL 60611, USA. yyu@peds.bsd.uchicago.edu.
Lily DuongGastrointestinal Diseases Research Unit, Department of Medicine, Queen's University, Kingston, ON K7L 2V7, Canada. 9ld27@queensu.ca.
Jun SunDepartment of Biochemistry, Rush University, Chicago, IL 60612, USA. Jun_Sun@rush.edu.
Elaine O PetrofGastrointestinal Diseases Research Unit, Department of Medicine, Queen's University, Kingston, ON K7L 2V7, Canada. eop@queensu.ca.
Queen's University · CAUniversity of Chicago · USRush University · US

Funding

ULTRASTRUCTURE AND CYTOMORPHOLOGY COREP30DK042086 · NIDDK · UNIVERSITY OF CHICAGO · PI LIU, CAMBRIAN YANGSHAO · 1990 to 2025
$29.8M
Re-Engineering Translational Research at the University of ChicagoUL1TR000430 · NCATS · UNIVERSITY OF CHICAGO · PI SOLWAY, JULIAN · 2012 to 2016
$20.2M
Immature intestinal NF-kB regulation, probiotics, and necrotizing enterocolitisR01HD059123 · NICHD · UNIVERSITY OF CHICAGO · PI CLAUD, ERIKA C · 2009 to 2013
$1.8M
Use of Probiotic Conditioned Media to Protect Against Necrotizing EnterocolitisR21AT004044 · NCCIH · UNIVERSITY OF CHICAGO · PI CLAUD, ERIKA C, PETROF, ELAINE O · 2008 to 2009
$424k
NCATS NIH HHS UL1 TR000430NCCIH NIH HHS AT004044NCCIH NIH HHS R21 AT004044NICHD NIH HHS HD059123NICHD NIH HHS R01 HD059123NIDDK NIH HHS DK42086NIDDK NIH HHS P30 DK042086
6 · The paper itself

Abstract

Proteasomes regulate many essential cellular processes by degrading intracellular proteins. While aging is known to be associated with dysfunction of the proteasome, there are few reports detailing activity and function of proteasomes in the early stages of life. To elucidate the function and development of mammalian proteasomes, 26S proteasomes were affinity-purified from rat intestine, spleen and liver. The developmental expression of core, regulatory and immunoproteasome subunits was analyzed by immunoblotting and reverse-transcriptase PCR of mRNA subunits, and proteasome catalytic function was determined by fluorogenic enzymatic assays. The expression of core (β2, β5, α7 and β1) and regulatory (Rpt5) subunits was found to be present at low levels at birth and increased over time particularly at weaning. In contrast, while gradual developmental progression of proteasome structure was also seen with the immunoproteasome subunits (β1i, β5i, and β2i), these were not present at birth. Our studies demonstrate a developmental pattern to 26S proteasome activity and subunit expression, with low levels of core proteasome components and absence of immunoproteasomes at birth followed by increases at later developmental stages. This correlates with findings from other studies of a developmental hyporesponsiveness of the adaptive immune system to allow establishment of microbial colonization immediately after birth.

Indexed as

Gene Expression Regulation, DevelopmentalAdaptive ImmunityAdenosine TriphosphatasesAnimalsAnimals, NewbornChymotrypsinFemaleHydrolysisOrgan SpecificityPregnancyProteasome Endopeptidase ComplexProtein SubunitsRatsTime FactorsTrypsinWeaningAdenosine TriphosphatasesATP dependent 26S proteaseChymotrypsinProteasome Endopeptidase ComplexProtein SubunitsTrypsin

Identifiers

PMID25177858
PMCPMC4192673
OpenAlexW2052722195

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.