ArticleBioMed research international2014
Comparative transcriptome analysis of leaves and roots in response to sudden increase in salinity in Brassica napus by RNA-seq.
Article in BioMed research international, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.
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Who cites it
35 citing papers in PubMed, 66 citations in OpenAlex.
- Comparative Transcriptome Analysis of Leaves and Roots Responses in Salt-Tolerant Barley Line CC89/Giza123 Under Salinity Stress.Current issues in molecular biology · 2026Article
- Whole-plant spatiotemporal responses to salinity reveal osmotic and ionic drivers of salt tolerance in broccoli.BMC plant biology · 2026Article
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- Transcriptional and epigenomic changes in response to polyethylene glycol-triggered osmotic stress in Brassica napus L.Journal of experimental botany · 2025Article
- Transcriptomic Analysis Reveals That the Photosynthesis and Carotenoid Metabolism Pathway Is Involved in the Salinity Stress Response inPlants (Basel, Switzerland) · 2025Article
- Functional Characterization of the Gibberellin (GA) Receptor ScGID1 in Sugarcane.International journal of molecular sciences · 2024Article
- Application of RNA sequencing to understand the response of rice seedlings to salt-alkali stress.BMC genomics · 2023Article
- De Novo Transcriptome Assembly, Gene Annotations, and Characterization of Functional Profiling Reveal Key Genes for Lead Alleviation in the Pb Hyperaccumulator Greek Mustard (Current issues in molecular biology · 2022Article
- Transcriptomic Profile Analysis ofGenes · 2022Article
- Genomic selection and genetic architecture of agronomic traits during modern rapeseed breeding.Nature genetics · 2022Article
- Combined Transcriptomics and Metabolomics Analysis Reveals the Molecular Mechanism of Salt Tolerance of Huayouza 62, an Elite Cultivar in Rapeseed (International journal of molecular sciences · 2022Article
- Transcriptomic, Metabolomic and Ionomic Analyses Reveal Early Modulation of Leaf Mineral Content inInternational journal of molecular sciences · 2022Article
- Genome-Wide Association Studies of Salt-Alkali Tolerance at Seedling and Mature Stages inFrontiers in plant science · 2022Article
- Transcriptomic Analysis of Salt-Stress-Responsive Genes in Barley Roots and Leaves.International journal of molecular sciences · 2021Article
- Omics: The way forward to enhance abiotic stress tolerance inGM crops & food · 2021Review
- Characterization of the Function of Two S1Fa-Like Family Genes FromFrontiers in plant science · 2021Article
- Transcriptome analysis and functional identification of GmMYB46 in soybean seedlings under salt stress.PeerJ · 2021Article
- Genome-Wide Association Studies of Salt Tolerance at Seed Germination and Seedling Stages inFrontiers in plant science · 2021Article
Corrections and comments
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Authors and funding
9 authors at 3 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Amphidiploid species in the Brassicaceae family, such as Brassica napus, are more tolerant to environmental stress than their diploid ancestors.A relatively salt tolerant B. napus line, N119, identified in our previous study, was used. N119 maintained lower Na(+) content, and Na(+)/K(+) and Na(+)/Ca(2+) ratios in the leaves than a susceptible line. The transcriptome profiles of both the leaves and the roots 1 h and 12 h after stress were investigated. De novo assembly of individual transcriptome followed by sequence clustering yielded 161,537 nonredundant sequences. A total of 14,719 transcripts were differentially expressed in either organs at either time points. GO and KO enrichment analyses indicated that the same 49 GO terms and seven KO terms were, respectively, overrepresented in upregulated transcripts in both organs at 1 h after stress. Certain overrepresented GO term of genes upregulated at 1 h after stress in the leaves became overrepresented in genes downregulated at 12 h. A total of 582 transcription factors and 438 transporter genes were differentially regulated in both organs in response to salt shock. The transcriptome depicting gene network in the leaves and the roots regulated by salt shock provides valuable information on salt resistance genes for future application to crop improvement.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.