Evidence map›Paper›PMID 25176648›Full record

ArticleCell reports2014

Cell-autonomous repression of Shh by transcription factor Pax6 regulates diencephalic patterning by controlling the central diencephalic organizer.

Isabel Martín Caballero, Martine N Manuel, Michael Molinek, Idoia Quintana-Urzainqui, Da Mi, Tomomi Shimogori, David J Price

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Article
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  4. Ancestral role of Pax6 in chordate brain regionalization.Frontiers in cell and developmental biology · 2024
    Article
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  11. Loss ofFrontiers in cellular neuroscience · 2019
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  18. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Isabel Martín CaballeroCentre for Integrative Physiology, University of Edinburgh, Edinburgh EH8 9XD, UK.
Martine N ManuelCentre for Integrative Physiology, University of Edinburgh, Edinburgh EH8 9XD, UK.
Michael MolinekCentre for Integrative Physiology, University of Edinburgh, Edinburgh EH8 9XD, UK.
Idoia Quintana-UrzainquiCentre for Integrative Physiology, University of Edinburgh, Edinburgh EH8 9XD, UK.
Da MiCentre for Integrative Physiology, University of Edinburgh, Edinburgh EH8 9XD, UK.
Tomomi ShimogoriRIKEN Brain Science Institute, Saitama 351-0198, Japan.
David J PriceCentre for Integrative Physiology, University of Edinburgh, Edinburgh EH8 9XD, UK. Electronic address: david.price@ed.ac.uk.
University of Edinburgh · GBRIKEN Center for Brain Science · JP

Funding

Medical Research Council G0800429Medical Research Council J003662/1Medical Research Council MR/J003662/1Wellcome Trust 08420Wellcome Trust 084200
6 · The paper itself

Abstract

During development, region-specific patterns of regulatory gene expression are controlled by signaling centers that release morphogens providing positional information to surrounding cells. Regulation of signaling centers themselves is therefore critical. The size and the influence of a Shh-producing forebrain organizer, the zona limitans intrathalamica (ZLI), are limited by Pax6. By studying mouse chimeras, we find that Pax6 acts cell autonomously to block Shh expression in cells around the ZLI. Immunoprecipitation and luciferase assays indicate that Pax6 can bind the Shh promoter and repress its function. An analysis of chimeras suggests that many of the regional gene expression pattern defects that occur in Pax6(-/-) diencephalic cells result from a non-cell-autonomous position-dependent defect of local intercellular signaling. Blocking Shh signaling in Pax6(-/-) mutants reverses major diencephalic patterning defects. We conclude that Pax6's cell-autonomous repression of Shh expression around the ZLI is critical for many aspects of normal diencephalic patterning.

Indexed as

AnimalsDiencephalonEye ProteinsGene Expression Regulation, DevelopmentalHedgehog ProteinsHomeodomain ProteinsMiceNeurogenesisPaired Box Transcription FactorsPAX6 Transcription FactorPromoter Regions, GeneticProtein BindingRepressor ProteinsEye ProteinsHedgehog ProteinsHomeodomain ProteinsPaired Box Transcription FactorsPax6 protein, mousePAX6 Transcription FactorRepressor ProteinsShh protein, mouse

Identifiers

PMID25176648
PMCPMC4241467
OpenAlexW2064898951

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.