Evidence map›Paper›PMID 25175028›Full record

ArticleMolecular cell2014

A MicroRNA precursor surveillance system in quality control of MicroRNA synthesis.

Xuhang Liu, Qi Zheng, Nicholas Vrettos, Manolis Maragkakis, Panagiotis Alexiou, Brian D Gregory, Zissimos Mourelatos

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 88 citations in OpenAlex.

  1. Article
  2. Advances in RNA modification in myocardial fibrosis (Review).International journal of molecular medicine · 2025
    Review
  3. Review
  4. The biogenesis and regulation of animal microRNAs.Nature reviews. Molecular cell biology · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Xuhang LiuDepartment of Pathology and Laboratory Medicine, Division of Neuropathology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA; PENN Genome Frontiers Institute, University of Pennsylvania, Philadelphia, PA 19104, USA.
Qi ZhengPENN Genome Frontiers Institute, University of Pennsylvania, Philadelphia, PA 19104, USA; Department of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA.
Nicholas VrettosDepartment of Pathology and Laboratory Medicine, Division of Neuropathology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA; PENN Genome Frontiers Institute, University of Pennsylvania, Philadelphia, PA 19104, USA.
Manolis MaragkakisDepartment of Pathology and Laboratory Medicine, Division of Neuropathology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA; PENN Genome Frontiers Institute, University of Pennsylvania, Philadelphia, PA 19104, USA.
Panagiotis AlexiouDepartment of Pathology and Laboratory Medicine, Division of Neuropathology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA; PENN Genome Frontiers Institute, University of Pennsylvania, Philadelphia, PA 19104, USA.
Brian D GregoryPENN Genome Frontiers Institute, University of Pennsylvania, Philadelphia, PA 19104, USA; Department of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA.
Zissimos MourelatosDepartment of Pathology and Laboratory Medicine, Division of Neuropathology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA; PENN Genome Frontiers Institute, University of Pennsylvania, Philadelphia, PA 19104, USA. Electronic address: mourelaz@uphs.upenn.edu.
University of Pennsylvania · US

Funding

Functional characterization of piRNPsR01GM072777 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI MOURELATOS, ZISSIMOS · 2005 to 2018
$4.7M
NIGMS NIH HHS GM072777NIGMS NIH HHS R01 GM072777
6 · The paper itself

Abstract

MicroRNAs (miRNAs) are essential for regulation of gene expression. Though numerous miRNAs have been identified by high-throughput sequencing, few precursor miRNAs (pre-miRNAs) are experimentally validated. Here we report a strategy for constructing high-throughput sequencing libraries enriched for full-length pre-miRNAs. We find widespread and extensive uridylation of Argonaute (Ago)-bound pre-miRNAs, which is primarily catalyzed by two terminal uridylyltransferases: TUT7 and TUT4. Uridylation by TUT7/4 not only polishes pre-miRNA 3' ends, but also facilitates their degradation by the exosome, preventing clogging of Ago with defective species. We show that the exosome exploits distinct substrate preferences of DIS3 and RRP6, its two catalytic subunits, to distinguish productive from defective pre-miRNAs. Furthermore, we identify a positive feedback loop formed by the exosome and TUT7/4 in triggering uridylation and degradation of Ago-bound pre-miRNAs. Our study reveals a pre-miRNA surveillance system that comprises TUT7, TUT4, and the exosome in quality control of miRNA synthesis.

Indexed as

Argonaute ProteinsExosome Multienzyme Ribonuclease ComplexExosomesGenomeHEK293 CellsHigh-Throughput Nucleotide SequencingHumansMicroRNAsRNA NucleotidyltransferasesUridineArgonaute ProteinsExosome Multienzyme Ribonuclease ComplexMicroRNAsRNA NucleotidyltransferasesUridine

Identifiers

PMID25175028
PMCPMC4169771
OpenAlexW2102440372

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.