Evidence map›Paper›PMID 25173846›Full record

ArticleGenetics2014

Plasmid copy number underlies adaptive mutability in bacteria.

Emiko Sano, Sophie Maisnier-Patin, John Paul Aboubechara, Semarhy Quiñones-Soto, John R Roth

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Plasmid mutation rates scale with copy number.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Mechanisms of gene duplication and amplification.Cold Spring Harbor perspectives in biology · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Emiko SanoDepartment of Microbiology and Molecular Genetics, University of California, Davis, California 95616.
Sophie Maisnier-PatinDepartment of Microbiology and Molecular Genetics, University of California, Davis, California 95616.
John Paul AboubecharaDepartment of Microbiology and Molecular Genetics, University of California, Davis, California 95616.
Semarhy Quiñones-SotoDepartment of Microbiology and Molecular Genetics, University of California, Davis, California 95616.
John R RothDepartment of Microbiology and Molecular Genetics, University of California, Davis, California 95616 jrroth@ucdavis.edu.
University of California, Davis · US

Funding

GENETIC ANALYSIS OF BACTERIAL CHROMSOME STRUCTURER01GM027068 · NIGMS · UNIVERSITY OF UTAH · PI ROTH, JOHN R · 1985 to 2018
$8.9M
NIGMS NIH HHS GM27068NIGMS NIH HHS R01 GM027068
6 · The paper itself

Abstract

The origin of mutations under selection has been intensively studied using the Cairns-Foster system, in which cells of an Escherichia coli lac mutant are plated on lactose and give rise to 100 Lac+ revertants over several days. These revertants have been attributed variously to stress-induced mutagenesis of nongrowing cells or to selective improvement of preexisting weakly Lac+ cells with no mutagenesis. Most revertant colonies (90%) contain stably Lac+ cells, while others (10%) contain cells with an unstable amplification of the leaky mutant lac allele. Evidence is presented that both stable and unstable Lac+ revertant colonies are initiated by preexisting cells with multiple copies of the F'lac plasmid, which carries the mutant lac allele. The tetracycline analog anhydrotetracycline (AnTc) inhibits growth of cells with multiple copies of the tetA gene. Populations with tetA on their F'lac plasmid include rare cells with an elevated plasmid copy number and multiple copies of both the tetA and lac genes. Pregrowth of such populations with AnTc reduces the number of cells with multiple F'lac copies and consequently the number of Lac+ colonies appearing under selection. Revertant yield is restored rapidly by a few generations of growth without AnTc. We suggest that preexisting cells with multiple F'lac copies divide very little under selection but have enough energy to replicate their F'lac plasmids repeatedly until reversion initiates a stable Lac+ colony. Preexisting cells whose high-copy plasmid includes an internal lac duplication grow under selection and produce an unstable Lac+ colony. In this model, all revertant colonies are initiated by preexisting cells and cannot be stress induced.

Indexed as

Gene DosageAdaptation, BiologicalDNA Copy Number VariationsEscherichia coliGene AmplificationGene DuplicationGenes, BacterialLac OperonMutagenesis, InsertionalMutationPlasmidsSalmonella typhimuriumTetracyclines4-epianhydrotetracyclineTetracyclinesadaptive mutationgene amplificationmutation under selectionselectionstress-induced mutagenesis

Identifiers

PMID25173846
PMCPMC4224180
OpenAlexW2110447723

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.