Evidence map›Paper›PMID 25173345›Full record

ArticleNature immunology2014

Transcriptional programs of lymphoid tissue capillary and high endothelium reveal control mechanisms for lymphocyte homing.

Mike Lee, Helena Kiefel, Melissa D LaJevic, Matthew S Macauley, Hiroto Kawashima, Edward O'Hara, Junliang Pan, James C Paulson, Eugene C Butcher

Erratum issuedAbstract read
In one paragraph

Article in Nature immunology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 96 papers.

0numbers the graph read from it
0cells of the map it votes in
96citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

96 citing papers in PubMed.

  1. Article
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  16. Mechanisms and functions of intestinal vascular specialization.The Journal of experimental medicine · 2024
    Review
  17. Article
  18. Review
  19. Stem-like CD4Science translational medicine · 2023
    Article
  20. Review

36 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Mike LeeLaboratory of Immunology and Vascular Biology, Department of Pathology, Stanford University School of Medicine, Stanford, California, USA.
Helena KiefelLaboratory of Immunology and Vascular Biology, Department of Pathology, Stanford University School of Medicine, Stanford, California, USA.
Melissa D LaJevicLaboratory of Immunology and Vascular Biology, Department of Pathology, Stanford University School of Medicine, Stanford, California, USA.
Matthew S MacauleyDepartments of Cell and Molecular Biology, Immunology and Microbial Science, and Chemical Physiology, The Scripps Research Institute, La Jolla, California USA.
Hiroto Kawashima
Edward O'HaraPalo Alto Veterans Institute for Research, Palo Alto, California, USA.
Junliang PanPalo Alto Veterans Institute for Research, Palo Alto, California, USA.
James C PaulsonDepartments of Cell and Molecular Biology, Immunology and Microbial Science, and Chemical Physiology, The Scripps Research Institute, La Jolla, California USA.
Eugene C Butcher1] Laboratory of Immunology and Vascular Biology, Department of Pathology, Stanford University School of Medicine, Stanford, California, USA. [2] Palo Alto Veterans Institute for Research, Palo Alto, California, USA. [3] The Center for Molecular Biology and Medicine, Veterans Affairs Palo Alto Health Care System, Palo Alto, California, USA.

Funding

MOLECULAR &CELLULAR IMMUNOBIOLOGYT32AI007290 · NIAID · STANFORD UNIVERSITY · PI Sean Curtis Bendall, Olivia M Martinez · 1985 to 2026
$27.0M
Treating lung inflammation by targeting SiglecsP01HL107151 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI TIEMEYER, MICHAEL · 2011 to 2017
$15.4M
REGULATION OF SIALOSIDE EXPRESSION IN LEUKOCYTESR01AI050143 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI PAULSON, JAMES C · 2003 to 2018
$7.0M
TUMOR BIOLOGYT32CA009151 · NCI · STANFORD UNIVERSITY · PI CLEARY, MICHAEL L · 1985 to 2014
$5.5M
Intestinal Lymphocyte TraffickingR37AI047822 · NIAID · PALO ALTO VETERANS INSTIT FOR RESEARCH · PI BUTCHER, EUGENE C · 2011 to 2020
$3.5M
ENDOTHELIAL CELL BIOLOGY IN INFLAMMATIONR37GM037734 · NIGMS · STANFORD UNIVERSITY · PI BUTCHER, EUGENE C · 1999 to 2008
$2.8M
Novel Mucosa-homing Dendritic Cell: Development, Trafficking and FunctionR01AI093981 · NIAID · PALO ALTO VETERANS INSTIT FOR RESEARCH · PI BUTCHER, EUGENE C · 2012 to 2016
$1.8M
A Novel Tolergenic Dendritic Cell: Biology & Therapeutic PotentialR01DK084647 · NIDDK · PALO ALTO VETERANS INSTIT FOR RESEARCH · PI BUTCHER, EUGENE C · 2009 to 2013
$1.5M
ENDOTHELIAL CELL BIOLOGY IN INFLAMMATIONR01GM037734 · NIGMS · STANFORD UNIVERSITY · PI BUTCHER, EUGENE C · 1987 to 2017
$938k
Tumor-expressed wnts and dendritic cell tolerance in cancer immune evasionF32CA180415 · NCI · STANFORD UNIVERSITY · PI LAJEVIC, MELISSA · 2013 to 2015
$92k
NCI NIH HHS 5T32CA009151NCI NIH HHS F32 CA180415NCI NIH HHS F32CA180415NCI NIH HHS T32 CA009151NHLBI NIH HHS P01 HL107151NIAID NIH HHS 5T32AI007290NIAID NIH HHS R01 AI050143NIAID NIH HHS R01 AI093981NIAID NIH HHS R01 AI50143NIAID NIH HHS R37 AI047822NIAID NIH HHS T32 AI007290NIDDK NIH HHS R01 DK084647NIGMS NIH HHS R01 GM037734NIGMS NIH HHS R37 GM037734NIGMS NIH HHS R37 GM37734
6 · The paper itself

Abstract

Lymphocytes are recruited from blood by high-endothelial venules (HEVs). We performed transcriptomic analyses and identified molecular signatures that distinguish HEVs from capillary endothelium and that define tissue-specific HEV specialization. Capillaries expressed gene programs for vascular development. HEV-expressed genes showed enrichment for genes encoding molecules involved in immunological defense and lymphocyte migration. We identify capillary and HEV markers and candidate mechanisms for regulated recruitment of lymphocytes, including a lymph node HEV-selective transmembrane mucin; transcriptional control of functionally specialized carbohydrate ligands for lymphocyte L-selectin; HEV expression of molecules for transendothelial migration; and metabolic programs for lipid mediators of lymphocyte motility and chemotaxis. We also elucidate a carbohydrate-recognition pathway that targets B cells to intestinal lymphoid tissues, defining CD22 as a lectin-homing receptor for mucosal HEVs.

Indexed as

Gene Expression ProfilingAnimalsCapillariesCell MovementEndothelial CellsEndotheliumFemaleFlow CytometryGene OntologyLymph NodesLymphocytesLymphoid TissueMaleMice, Inbred BALB CMice, Inbred C57BLMice, Knockout

Identifiers

PMID25173345
PMCPMC4222088

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.