Evidence map›Paper›PMID 25172956›Full record

ArticleMolecular & cellular proteomics : MCP2014

Mechanistic peptidomics: factors that dictate specificity in the formation of endogenous peptides in human milk.

Andres Guerrero, David C Dallas, Stephanie Contreras, Sabrina Chee, Evan A Parker, Xin Sun, Lauren Dimapasoc, Daniela Barile, J Bruce German, Carlito B Lebrilla

Open access · hybridAbstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 81 citations in OpenAlex.

  1. Article
  2. Comparative inactivation ofFrontiers in microbiology · 2026
    Article
  3. Article
  4. Bioactive milk peptides: an updated comprehensive overview and database.Critical reviews in food science and nutrition · 2024
    Review
  5. Article
  6. Proteomic Analysis ofPlants (Basel, Switzerland) · 2024
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Monitoring Human Milk β-Casein Phosphorylation andInternational journal of molecular sciences · 2021
    Article
  17. Review
  18. Article
  19. Article
  20. Alternate RNA Structures.Cold Spring Harbor perspectives in biology · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Andres GuerreroFrom the ‡Department of Chemistry, University of California at Davis, One Shields Avenue, Davis, California 95616; lebrilla@chem.ucdavis.edu andguerrero@ucdavis.edu.
David C Dallas¶Department of Food Science, University of California at Davis, One Shields Avenue, Davis, California 95616; ‖Foods for Health Institute, University of California at Davis, One Shields Avenue, Davis, California 95616.
Stephanie ContrerasFrom the ‡Department of Chemistry, University of California at Davis, One Shields Avenue, Davis, California 95616;
Sabrina CheeFrom the ‡Department of Chemistry, University of California at Davis, One Shields Avenue, Davis, California 95616;
Evan A ParkerFrom the ‡Department of Chemistry, University of California at Davis, One Shields Avenue, Davis, California 95616;
Xin SunFrom the ‡Department of Chemistry, University of California at Davis, One Shields Avenue, Davis, California 95616;
Lauren DimapasocFrom the ‡Department of Chemistry, University of California at Davis, One Shields Avenue, Davis, California 95616;
Daniela Barile¶Department of Food Science, University of California at Davis, One Shields Avenue, Davis, California 95616; ‖Foods for Health Institute, University of California at Davis, One Shields Avenue, Davis, California 95616.
J Bruce German¶Department of Food Science, University of California at Davis, One Shields Avenue, Davis, California 95616; ‖Foods for Health Institute, University of California at Davis, One Shields Avenue, Davis, California 95616.
Carlito B LebrillaFrom the ‡Department of Chemistry, University of California at Davis, One Shields Avenue, Davis, California 95616; lebrilla@chem.ucdavis.edu andguerrero@ucdavis.edu.
University of California, Davis · US

Funding

The incorporation of human milk oligosaccharides in brain glycoconjugatesR01GM049077 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI LEBRILLA, CARLITO B · 1999 to 2024
$6.3M
Deciphering the function of naturally occurring peptides in human milkK99HD079561 · NICHD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI DALLAS, DAVID CHARLES · 2014 to 2015
$157k
FOURIER TRANSFORM MASS SPECTROMETRY OF OLIGOSACCHARIDESR29GM049077 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI LEBRILLA, CARLITO B · 1993 to 1997
–
NIGMS NIH HHS GM049077NIGMS NIH HHS R01 GM049077
6 · The paper itself

Abstract

An extensive mass spectrometry analysis of the human milk peptidome has revealed almost 700 endogenous peptides from 30 different proteins. Two in-house computational tools were created and used to visualize and interpret the data through both alignment of the peptide quasi-molecular ion intensities and estimation of the differential enzyme participation. These results reveal that the endogenous proteolytic activity in the mammary gland is remarkably specific and well conserved. Certain proteins-not necessarily the most abundant ones-are digested by the proteases present in milk, yielding endogenous peptides from selected regions. Our results strongly suggest that factors such as the presence of specific proteases, the position and concentration of cleavage sites, and, more important, the intrinsic disorder of segments of the protein drive this proteolytic specificity in the mammary gland. As a consequence of this selective hydrolysis, proteins that typically need to be cleaved at specific positions in order to exert their activity are properly digested, and bioactive peptides encoded in certain protein sequences are released. Proteins that must remain intact in order to maintain their activity in the mammary gland or in the neonatal gastrointestinal tract are unaffected by the hydrolytic environment present in milk. These results provide insight into the intrinsic structural mechanisms that facilitate the selectivity of the endogenous milk protease activity and might be useful to those studying the peptidomes of other biofluids.

Indexed as

Amino Acid SequenceEndopeptidasesFemaleHumansMilk, HumanMilk ProteinsMolecular Sequence DataPeptide MappingPeptidesProteolysisProteomeSubstrate SpecificityEndopeptidasesMilk ProteinsPeptidesProteome

Identifiers

PMID25172956
PMCPMC4256488
OpenAlexW2099591743

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.