Evidence map›Paper›PMID 25172905›Full record

ArticleGenome biology and evolution2014

Microsporidian genomes harbor a diverse array of transposable elements that demonstrate an ancestry of horizontal exchange with metazoans.

Nicolas Parisot, Adrian Pelin, Cyrielle Gasc, Valérie Polonais, Abdel Belkorchia, Johan Panek, Hicham El Alaoui, David G Biron, Emilie Brasset, Chantal Vaury and 4 more

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
5.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
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  10. Impact of Genome Reduction in Microsporidia.Experientia supplementum (2012) · 2022
    Article
  11. Microsporidia, a Highly Adaptive Organism and Its Host Expansion to Humans.Frontiers in cellular and infection microbiology · 2022
    Review
  12. Comparative Genomics of Microsporidia.Experientia supplementum (2012) · 2022
    Article
  13. Article
  14. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 2 countries.

Nicolas ParisotClermont Université, Université d'Auvergne, EA 4678 CIDAM, Clermont-Ferrand, France CNRS, UMR 6023, LMGE, Aubière, France ncorradi@uottawa.ca eric.peyretaillade@udamail.fr emmanuelle.lerat@univ-lyon1.fr.
Adrian PelinCanadian Institute for Advanced Research, Department of Biology, University of Ottawa, Ontario, Canada ncorradi@uottawa.ca eric.peyretaillade@udamail.fr emmanuelle.lerat@univ-lyon1.fr.
Cyrielle GascClermont Université, Université d'Auvergne, EA 4678 CIDAM, Clermont-Ferrand, France.
Valérie PolonaisCNRS, UMR 6023, LMGE, Aubière, France Clermont Université, Université d'Auvergne, Laboratoire "Microorganismes: Génome et Environnement," Clermont-Ferrand, France.
Abdel BelkorchiaCNRS, UMR 6023, LMGE, Aubière, France Clermont Université, Université d'Auvergne, Laboratoire "Microorganismes: Génome et Environnement," Clermont-Ferrand, France.
Johan PanekCNRS, UMR 6023, LMGE, Aubière, France Clermont Université, Université d'Auvergne, Laboratoire "Microorganismes: Génome et Environnement," Clermont-Ferrand, France.
Hicham El AlaouiCNRS, UMR 6023, LMGE, Aubière, France Clermont Université, Université d'Auvergne, Laboratoire "Microorganismes: Génome et Environnement," Clermont-Ferrand, France.
David G BironCNRS, UMR 6023, LMGE, Aubière, France Clermont Université, Université d'Auvergne, Laboratoire "Microorganismes: Génome et Environnement," Clermont-Ferrand, France.
Emilie BrassetClermont Université, Université d'Auvergne, Clermont-Ferrand, France, Inserm; U 1103, Clermont-Ferrand, France, CNRS; UMR 6293, Clermont-Ferrand, France.
Chantal VauryClermont Université, Université d'Auvergne, Clermont-Ferrand, France, Inserm; U 1103, Clermont-Ferrand, France, CNRS; UMR 6293, Clermont-Ferrand, France.
Pierre PeyretClermont Université, Université d'Auvergne, EA 4678 CIDAM, Clermont-Ferrand, France.
Nicolas CorradiCanadian Institute for Advanced Research, Department of Biology, University of Ottawa, Ontario, Canada ncorradi@uottawa.ca eric.peyretaillade@udamail.fr emmanuelle.lerat@univ-lyon1.fr.
Éric PeyretailladeClermont Université, Université d'Auvergne, EA 4678 CIDAM, Clermont-Ferrand, France ncorradi@uottawa.ca eric.peyretaillade@udamail.fr emmanuelle.lerat@univ-lyon1.fr.
Emmanuelle LeratUniversité de Lyon; Université Lyon 1; CNRS, UMR 5558, Laboratoire de Biométrie et Biologie Évolutive, F-69622 Villeurbanne, France ncorradi@uottawa.ca eric.peyretaillade@udamail.fr emmanuelle.lerat@univ-lyon1.fr.
Centre National de la Recherche Scientifique · FRUniversité Clermont Auvergne · FRCanadian Institute for Advanced Research · CAUniversité Claude Bernard Lyon 1 · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Microsporidian genomes are the leading models to understand the streamlining in response to a pathogenic lifestyle; they are gene-poor and often possess small genomes. In this study, we show a feature of microsporidian genomes that contrasts this pattern of genome reduction. Specifically, genome investigations targeted at Anncaliia algerae, a human pathogen with a genome size of 23 Mb, revealed the presence of a hitherto undetected diversity in transposable elements (TEs). A total of 240 TE families per genome were identified, exceeding that found in many free-living fungi, and searches of microsporidian species revealed that these mobile elements represent a significant portion of their coding repertoire. Their phylogenetic analysis revealed that many cases of ancestry involve recent and bidirectional horizontal transfers with metazoans. The abundance and horizontal transfer origin of microsporidian TEs highlight a novel dimension of genome evolution in these intracellular pathogens, demonstrating that factors beyond reduction are at play in their diversification.

Indexed as

DNA Transposable ElementsGene Transfer, HorizontalGenome, FungalEvolution, MolecularHumansMicrosporidiaMolecular Sequence DataMycosesPhylogenyDNA Transposable Elementsdiversitygenome evolutionhorizontal transfersmicrosporidiatransposable elements

Identifiers

PMID25172905
PMCPMC4202319
OpenAlexW1999195337

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.