Evidence map›Paper›PMID 25172856›Full record

ArticleApplied and environmental microbiology2014

High-level diversity of tailed phages, eukaryote-associated viruses, and virophage-like elements in the metaviromes of antarctic soils.

Olivier Zablocki, Lonnie van Zyl, Evelien M Adriaenssens, Enrico Rubagotti, Marla Tuffin, Stephen Craig Cary, Don Cowan

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed.

  1. Review
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  9. A Metagenomics Approach to Enumerate Bacteriophages in a Food Niche.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  10. Article
  11. Article
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  13. Soil viral diversity, ecology and climate change.Nature reviews. Microbiology · 2023
    Review
  14. Article
  15. Article
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7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Olivier ZablockiCentre for Microbial Ecology and Genomics, University of Pretoria, Pretoria, South Africa Genomics Research Institute, University of Pretoria, Pretoria, South Africa.
Lonnie van ZylInstitute for Microbial Biotechnology and Metagenomics, University of the Western Cape, Bellville, South Africa.
Evelien M AdriaenssensCentre for Microbial Ecology and Genomics, University of Pretoria, Pretoria, South Africa Genomics Research Institute, University of Pretoria, Pretoria, South Africa.
Enrico RubagottiGenomics Research Institute, University of Pretoria, Pretoria, South Africa.
Marla TuffinInstitute for Microbial Biotechnology and Metagenomics, University of the Western Cape, Bellville, South Africa.
Stephen Craig CaryThe International Centre for Terrestrial Antarctic Research, University of Waikato, Hamilton, New Zealand.
Don CowanCentre for Microbial Ecology and Genomics, University of Pretoria, Pretoria, South Africa Genomics Research Institute, University of Pretoria, Pretoria, South Africa don.cowan@up.ac.za.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The metaviromes of two distinct Antarctic hyperarid desert soil communities have been characterized. Hypolithic communities, cyanobacterium-dominated assemblages situated on the ventral surfaces of quartz pebbles embedded in the desert pavement, showed higher virus diversity than surface soils, which correlated with previous bacterial community studies. Prokaryotic viruses (i.e., phages) represented the largest viral component (particularly Mycobacterium phages) in both habitats, with an identical hierarchical sequence abundance of families of tailed phages (Siphoviridae > Myoviridae > Podoviridae). No archaeal viruses were found. Unexpectedly, cyanophages were poorly represented in both metaviromes and were phylogenetically distant from currently characterized cyanophages. Putative phage genomes were assembled and showed a high level of unaffiliated genes, mostly from hypolithic viruses. Moreover, unusual gene arrangements in which eukaryotic and prokaryotic virus-derived genes were found within identical genome segments were observed. Phycodnaviridae and Mimiviridae viruses were the second-most-abundant taxa and more numerous within open soil. Novel virophage-like sequences (within the Sputnik clade) were identified. These findings highlight high-level virus diversity and novel species discovery potential within Antarctic hyperarid soils and may serve as a starting point for future studies targeting specific viral groups.

Indexed as

BiodiversitySoil MicrobiologyAntarctic RegionsBacteriophagesEcosystemEukaryotaMolecular Sequence DataPhylogenySatellite Viruses

Identifiers

PMID25172856
PMCPMC4249006

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.