Evidence map›Paper›PMID 25171409›Full record

ArticleCell2014

Cross-kingdom chemical communication drives a heritable, mutually beneficial prion-based transformation of metabolism.

Daniel F Jarosz, Jessica C S Brown, Gordon A Walker, Manoshi S Datta, W Lloyd Ung, Alex K Lancaster, Assaf Rotem, Amelia Chang, Gregory A Newby, David A Weitz and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed
8.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed, 156 citations in OpenAlex.

  1. Article
  2. Article
  3. Biocontainment efficacy redefined.Applied and environmental microbiology · 2025
    Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Effects of Co-Fermentation ofFoods (Basel, Switzerland) · 2023
    Article
  9. Article
  10. Article
  11. [Application of Droplet-Based Microfluidics in Microbial Research].Sichuan da xue xue bao. Yi xue ban = Journal of Sichuan University. Medical science edition · 2023
    Review
  12. Article
  13. Article
  14. Truth in wine yeast.Microbial biotechnology · 2022
    Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. Droplet Microfluidics for Microbial Biotechnology.Advances in biochemical engineering/biotechnology · 2022
    Article
  20. Review

15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Daniel F JaroszWhitehead Institute for Biomedical Research, Cambridge, MA 02142, USA; Departments of Chemical and Systems Biology and of Developmental Biology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Jessica C S BrownWhitehead Institute for Biomedical Research, Cambridge, MA 02142, USA; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Gordon A WalkerDepartment of Viticulture and Enology, University of California, Davis, Davis, CA 95616, USA.
Manoshi S DattaComputational and Systems Biology Initiative, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
W Lloyd UngDepartment of Physics, Harvard University, Cambridge, MA 02138, USA.
Alex K LancasterWhitehead Institute for Biomedical Research, Cambridge, MA 02142, USA; Department of Pathology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA 02215, USA; Center for Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA.
Assaf RotemDepartment of Physics, Harvard University, Cambridge, MA 02138, USA.
Amelia ChangWhitehead Institute for Biomedical Research, Cambridge, MA 02142, USA; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Gregory A NewbyWhitehead Institute for Biomedical Research, Cambridge, MA 02142, USA; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
David A WeitzDepartment of Physics, Harvard University, Cambridge, MA 02138, USA; School of Engineering and Applied Sciences, Harvard University, Cambridge, MA 02138, USA.
Linda F BissonDepartment of Viticulture and Enology, University of California, Davis, Davis, CA 95616, USA. Electronic address: lfbisson@ucdavis.edu.
Susan LindquistWhitehead Institute for Biomedical Research, Cambridge, MA 02142, USA; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; Howard Hughes Medical Institute, Chevy Chase, MD 20815, USA. Electronic address: lindquist_admin@wi.mit.edu.
Massachusetts Institute of Technology · USHarvard University · USUniversity of California, Davis · USStanford University · US

Funding

Graduate Training in Computational and Systems BiologyT32GM087237 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BURGE, CHRISTOPHER B · 2009 to 2023
$4.6M
Quantitative analysis of the evolving genotype-to-phenotype mapR00GM098600 · NIGMS · STANFORD UNIVERSITY · PI JAROSZ, DANIEL · 2013 to 2015
$728k
Quantitative analysis of the evolving genotype-to-phenotype mapK99GM098600 · NIGMS · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI JAROSZ, DANIEL · 2011 to 2012
$134k
Howard Hughes Medical InstituteNIGMS NIH HHS K99 GM098600NIGMS NIH HHS R00 GM098600NIGMS NIH HHS T32 GM087237
6 · The paper itself

Abstract

In experimental science, organisms are usually studied in isolation, but in the wild, they compete and cooperate in complex communities. We report a system for cross-kingdom communication by which bacteria heritably transform yeast metabolism. An ancient biological circuit blocks yeast from using other carbon sources in the presence of glucose. [GAR(+)], a protein-based epigenetic element, allows yeast to circumvent this "glucose repression" and use multiple carbon sources in the presence of glucose. Some bacteria secrete a chemical factor that induces [GAR(+)]. [GAR(+)] is advantageous to bacteria because yeast cells make less ethanol and is advantageous to yeast because their growth and long-term viability is improved in complex carbon sources. This cross-kingdom communication is broadly conserved, providing a compelling argument for its adaptive value. By heritably transforming growth and survival strategies in response to the selective pressures of life in a biological community, [GAR(+)] presents a unique example of Lamarckian inheritance.

Indexed as

Epigenesis, GeneticFermentationGlucosePrionsSaccharomyces cerevisiaeStaphylococcus hominisWineYeastsGlucosePrions

Identifiers

PMID25171409
PMCPMC4424051
OpenAlexW2141165131

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.