Evidence map›Paper›PMID 25171406›Full record

ArticleCell2014

Single-cell identity generated by combinatorial homophilic interactions between α, β, and γ protocadherins.

Chan Aye Thu, Weisheng V Chen, Rotem Rubinstein, Maxime Chevee, Holly N Wolcott, Klara O Felsovalyi, Juan Carlos Tapia, Lawrence Shapiro, Barry Honig, Tom Maniatis

Abstract read
In one paragraph

Article in Cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 145 papers.

0numbers the graph read from it
0cells of the map it votes in
145citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

145 citing papers in PubMed.

  1. Article
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  6. On the same side: VISTA and its ligands interact in cis on the cell surface.Protein science : a publication of the Protein Society · 2026
    Article
  7. Structural Insights into Ordered Multicomponent Assemblies in Cell Junctions.Advances in experimental medicine and biology · 2026
    Review
  8. Article
  9. Article
  10. Surface delivery quantification reveals distinct trafficking efficiencies among clustered protocadherin isoforms.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Cell Adhesion Molecule Protocadherin-γC5 Ameliorates Aβ Plaque Pathogenesis by Modulating Astrocyte Function in Alzheimer's Disease.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2025
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

85 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Chan Aye ThuDepartment of Biochemistry and Molecular Biophysics, Columbia University Medical Center, 701 W 168th Street, New York, NY 10032, USA.
Weisheng V ChenDepartment of Biochemistry and Molecular Biophysics, Columbia University Medical Center, 701 W 168th Street, New York, NY 10032, USA.
Rotem RubinsteinCenter for Computational Biology and Bioinformatics, Columbia University Medical Center, 1130 St. Nicholas Avenue, New York, NY 10032, USA; Department of System Biology, Columbia University, 1130 St. Nicholas Avenue, New York, NY 10032, USA; Howard Hughes Medical Institute.
Maxime CheveeDepartment of Biochemistry and Molecular Biophysics, Columbia University Medical Center, 701 W 168th Street, New York, NY 10032, USA.
Holly N WolcottDepartment of Biochemistry and Molecular Biophysics, Columbia University Medical Center, 1150 St. Nicholas Avenue, Russ Berrie Pavilion, New York, NY 10032, USA.
Klara O FelsovalyiCenter for Computational Biology and Bioinformatics, Columbia University Medical Center, 1130 St. Nicholas Avenue, New York, NY 10032, USA; Department of System Biology, Columbia University, 1130 St. Nicholas Avenue, New York, NY 10032, USA; Howard Hughes Medical Institute.
Juan Carlos TapiaDepartment of Neuroscience, Columbia University, 1051 Riverside Drive, New York, NY 10032, USA.
Lawrence ShapiroDepartment of Biochemistry and Molecular Biophysics, Columbia University Medical Center, 1150 St. Nicholas Avenue, Russ Berrie Pavilion, New York, NY 10032, USA; Department of System Biology, Columbia University, 1130 St. Nicholas Avenue, New York, NY 10032, USA.
Barry HonigDepartment of Biochemistry and Molecular Biophysics, Columbia University Medical Center, 1150 St. Nicholas Avenue, Russ Berrie Pavilion, New York, NY 10032, USA; Center for Computational Biology and Bioinformatics, Columbia University Medical Center, 1130 St. Nicholas Avenue, New York, NY 10032, USA; Department of System Biology, Columbia University, 1130 St. Nicholas Avenue, New York, NY 10032, USA; Howard Hughes Medical Institute. Electronic address: bh6@columbia.edu.
Tom ManiatisDepartment of Biochemistry and Molecular Biophysics, Columbia University Medical Center, 701 W 168th Street, New York, NY 10032, USA. Electronic address: tm2472@cumc.columbia.edu.

Funding

TRAINING PROGRAM IN MOLECULAR BIOPHYSICST32GM008281 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI PALMER, ARTHUR G · 1988 to 2017
$5.4M
The structural basis of cis and trans protocadherin interactionsR01GM107571 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MANIATIS, THOMAS P, SHAPIRO, LAWRENCE S · 2013 to 2016
$1.8M
Training Program in Computational BiologyT32GM082797 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI HONIG, BARRY H · 2008 to 2015
$1.4M
Protocadherin Gene Expression and FunctionR56NS043915 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MANIATIS, THOMAS P · 2012 to 2012
$553k
NIGMS NIH HHS 1R01GM107571-01NIGMS NIH HHS R01 GM107571NIGMS NIH HHS T32 GM008281NIGMS NIH HHS T32GM008281NIGMS NIH HHS T32 GM082797NIGMS NIH HHS T32GM082797NINDS NIH HHS 2R56NS043915-33A1NINDS NIH HHS R56 NS043915
6 · The paper itself

Abstract

Individual mammalian neurons stochastically express distinct repertoires of α, β, and γ protocadherin (Pcdh) proteins, which function in neural circuit assembly. We report that all three subfamilies of clustered Pcdhs can engage in specific homophilic interactions, that cell surface delivery of Pcdhα isoforms requires cis interactions with other Pcdhs, and that the extracellular cadherin domain EC6 plays a critical role in this process. Examination of homophilic interactions between specific combinations of multiple Pcdh isoforms revealed that Pcdh combinatorial recognition specificities depend on the identity of all of the expressed isoforms. A single mismatched Pcdh isoform can interfere with these combinatorial homophilic interactions. A theoretical analysis reveals that assembly of Pcdh isoforms into multimeric recognition units and the observed tolerance for mismatched isoforms can generate cell surface diversity sufficient for single-cell identity. However, the competing demands of nonself discrimination and self-recognition place limitations on the mechanisms by which homophilic recognition units can function.

Indexed as

Amino Acid SequenceAnimalsCadherin Related ProteinsCadherinsMiceMice, Inbred C57BLMolecular Sequence DataNeuronsProtein Interaction Domains and MotifsProtein IsoformsSequence AlignmentCadherin Related ProteinsCadherinsGamma-protocadherinsProtein Isoforms

Identifiers

PMID25171406
PMCPMC4183217

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.