Evidence map›Paper›PMID 25170834›Full record

ArticlePloS one2014

HIV-1 Vpr induces interferon-stimulated genes in human monocyte-derived macrophages.

Muhammad Atif Zahoor, Guangai Xue, Hirotaka Sato, Tomoyuki Murakami, Shin-nosuke Takeshima, Yoko Aida

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 79 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Muhammad Atif ZahoorViral Infectious Diseases Unit, RIKEN, Wako, Saitama, Japan; Japanese Foundation of AIDS Prevention, Tokyo, Japan.
Guangai XueViral Infectious Diseases Unit, RIKEN, Wako, Saitama, Japan; Japanese Foundation of AIDS Prevention, Tokyo, Japan.
Hirotaka SatoViral Infectious Diseases Unit, RIKEN, Wako, Saitama, Japan.
Tomoyuki MurakamiViral Infectious Diseases Unit, RIKEN, Wako, Saitama, Japan.
Shin-nosuke TakeshimaViral Infectious Diseases Unit, RIKEN, Wako, Saitama, Japan.
Yoko AidaViral Infectious Diseases Unit, RIKEN, Wako, Saitama, Japan.
RIKEN · JPJapanese Foundation For Cancer Research · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Macrophages act as reservoirs of human immunodeficiency virus type 1 (HIV-1) and play an important role in its transmission to other cells. HIV-1 Vpr is a multi-functional protein involved in HIV-1 replication and pathogenesis; however, its exact role in HIV-1-infected human macrophages remains poorly understood. In this study, we used a microarray approach to explore the effects of HIV-1 Vpr on the transcriptional profile of human monocyte-derived macrophages (MDMs). More than 500 genes, mainly those involved in the innate immune response, the type I interferon pathway, cytokine production, and signal transduction, were differentially regulated (fold change >2.0) after infection with a recombinant adenovirus expressing HIV-1 Vpr protein. The differential expression profiles of select interferon-stimulated genes (ISGs) and genes involved in the innate immune response, including STAT1, IRF7, MX1, MX2, ISG15, ISG20, IFIT1, IFIT2, IFIT3, IFI27, IFI44L, APOBEC3A, DDX58 (RIG-I), TNFSF10 (TRAIL), and RSAD2 (viperin) were confirmed by real-time quantitative PCR and were consistent with the microarray data. In addition, at the post-translational level, HIV-1 Vpr induced the phosphorylation of STAT1 at tyrosine 701 in human MDMs. These results demonstrate that HIV-1 Vpr leads to the induction of ISGs and expand the current understanding of the function of Vpr and its role in HIV-1 immune pathogenesis.

Indexed as

Gene Expression RegulationCells, CulturedDependovirusGene Expression ProfilingHEK293 CellsHeLa CellsHumansImmunity, InnateInterferon Regulatory Factor-7InterferonsMacrophagesOligonucleotide Array Sequence AnalysisPhosphorylationSTAT1 Transcription Factorvpr Gene Products, Human Immunodeficiency VirusInterferon Regulatory Factor-7InterferonsIRF7 protein, humanSTAT1 protein, humanSTAT1 Transcription Factorvpr Gene Products, Human Immunodeficiency Virusvpr protein, Human immunodeficiency virus 1

Identifiers

PMID25170834
PMCPMC4149569
OpenAlexW2038825852

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.