Evidence map›Paper›PMID 25170075›Full record

ArticleThe Journal of biological chemistry2014

RecO protein initiates DNA recombination and strand annealing through two alternative DNA binding mechanisms.

Mikhail Ryzhikov, Richa Gupta, Michael Glickman, Sergey Korolev

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 19 citations in OpenAlex.

  1. The Role of the RecFOR Complex in Genome Stability.International journal of molecular sciences · 2025
    Review
  2. Article
  3. Article
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  6. TnMicrobiology (Reading, England) · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Mikhail RyzhikovFrom the Department of Biochemistry and Molecular Biology, St. Louis University School of Medicine, St. Louis, Missouri 63104 and.
Richa GuptaDivision of Infectious Diseases and Immunology Program, Memorial Sloan Kettering Cancer Center, New York, New York 10065.
Michael GlickmanDivision of Infectious Diseases and Immunology Program, Memorial Sloan Kettering Cancer Center, New York, New York 10065.
Sergey KorolevFrom the Department of Biochemistry and Molecular Biology, St. Louis University School of Medicine, St. Louis, Missouri 63104 and korolevs@slu.edu.
Memorial Sloan Kettering Cancer Center · USSaint Louis University · US

Funding

Novel pathway of DNA inter-strand crosslink repair in mycobacteriaR01AI064693 · NIAID · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Michael S Glickman, Stewart H Shuman · 2005 to 2026
$11.1M
Structure-function of recombination/replication mediatorR01GM073837 · NIGMS · SAINT LOUIS UNIVERSITY · PI KOROLEV, SERGEY · 2006 to 2010
$1.4M
NIAID NIH HHS AI064693NIAID NIH HHS R01 AI064693NIGMS NIH HHS GM073837NIGMS NIH HHS R01 GM073837
6 · The paper itself

Abstract

Recombination mediator proteins (RMPs) are important for genome stability in all organisms. Several RMPs support two alternative reactions: initiation of homologous recombination and DNA annealing. We examined mechanisms of RMPs in both reactions with Mycobacterium smegmatis RecO (MsRecO) and demonstrated that MsRecO interacts with ssDNA by two distinct mechanisms. Zinc stimulates MsRecO binding to ssDNA during annealing, whereas the recombination function is zinc-independent and is regulated by interaction with MsRecR. Thus, different structural motifs or conformations of MsRecO are responsible for interaction with ssDNA during annealing and recombination. Neither annealing nor recombinase loading depends on MsRecO interaction with the conserved C-terminal tail of single-stranded (ss) DNA-binding protein (SSB), which is known to bind Escherichia coli RecO. However, similarly to E. coli proteins, MsRecO and MsRecOR do not dismiss SSB from ssDNA, suggesting that RMPs form a complex with SSB-ssDNA even in the absence of binding to the major protein interaction motif. We propose that alternative conformations of such complexes define the mechanism by which RMPs initiate the repair of stalled replication and support two different functions during recombinational repair of DNA breaks.

Indexed as

Recombination, GeneticAdenosine TriphosphateAmino Acid MotifsDNADNA-Binding ProteinsDNA RepairDNA, Single-StrandedEscherichia coliEscherichia coli ProteinsHydrolysisKineticsMycobacterium smegmatisProtein BindingProtein Interaction MappingZincAdenosine TriphosphateDNADNA-Binding ProteinsDNA, Single-StrandedEscherichia coli ProteinsRecO protein, E coliRecR protein, E coliZincDNA-binding ProteinDNA RepairHomologous RecombinationProtein-Protein InteractionProtein Structure

Identifiers

PMID25170075
PMCPMC4200245
OpenAlexW2048727149

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.