Evidence map›Paper›PMID 25168903›Full record

ArticleInvestigative ophthalmology & visual science2014

Comprehensive assessment of genetic variants within TCF4 in Fuchs' endothelial corneal dystrophy.

Eric D Wieben, Ross A Aleff, Bruce W Eckloff, Elizabeth J Atkinson, Saurabh Baheti, Sumit Middha, William L Brown, Sanjay V Patel, Jean-Pierre A Kocher, Keith H Baratz

Open access · greenAbstract read
In one paragraph

Article in Investigative ophthalmology & visual science, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 3 pooled it
3.0field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 3 syntheses or guidelines pooled it, 33 citations in OpenAlex.

  1. Emerging treatments for corneal endothelium decompensation - a systematic review.Graefe's archive for clinical and experimental ophthalmology = Albrecht von Graefes Archiv fur klinische und experimentelle Ophthalmologie · 2024
    Pooled it
  2. Pooled it
  3. Pooled it
  4. Article
  5. Molecular Studies ofInternational journal of molecular sciences · 2025
    Article
  6. Article
  7. Review
  8. Review
  9. Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. CTG18.1 repeat expansion may reduce TCF4 gene expression in corneal endothelial cells of German patients with Fuchs' dystrophy.Graefe's archive for clinical and experimental ophthalmology = Albrecht von Graefes Archiv fur klinische und experimentelle Ophthalmologie · 2017
    Article
  15. Article
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Eric D WiebenDepartments of Biochemistry and Molecular Biology , Mayo Clinic, Rochester, Minnesota, United States Medical Genome Facility, Mayo Clinic, Rochester, Minnesota, United States.
Ross A AleffDepartments of Biochemistry and Molecular Biology , Mayo Clinic, Rochester, Minnesota, United States.
Bruce W EckloffMedical Genome Facility, Mayo Clinic, Rochester, Minnesota, United States.
Elizabeth J AtkinsonDepartments of Health Sciences Research and Biomedical Statistics and Informatics, Mayo Clinic, Rochester, Minnesota, United States.
Saurabh BahetiDepartments of Health Sciences Research and Biomedical Statistics and Informatics, Mayo Clinic, Rochester, Minnesota, United States.
Sumit MiddhaDepartments of Health Sciences Research and Biomedical Statistics and Informatics, Mayo Clinic, Rochester, Minnesota, United States.
William L BrownDepartment of Ophthalmology, Mayo Clinic, Rochester, Minnesota, United States.
Sanjay V PatelDepartment of Ophthalmology, Mayo Clinic, Rochester, Minnesota, United States.
Jean-Pierre A KocherDepartments of Health Sciences Research and Biomedical Statistics and Informatics, Mayo Clinic, Rochester, Minnesota, United States.
Keith H BaratzDepartment of Ophthalmology, Mayo Clinic, Rochester, Minnesota, United States.
Mayo Clinic · USMayo Clinic in Florida · US

Funding

MAYO CLINIC CENTER FOR TRANSLATIONAL SCIENCE ACTIVITIESUL1RR024150 · NCRR · MAYO CLINIC ROCHESTER · PI RIZZA, ROBERT A. · 2006 to 2011
$66.4M
NCRR NIH HHS UL1 RR024150
6 · The paper itself

Abstract

purposeThe single nucleotide variant (SNV), rs613872, in the transcription factor 4 (TCF4) gene was previously found to be strongly associated (P = 6 × 10(-26)) with Fuchs' endothelial corneal dystrophy (FECD). Subsequently, an intronic expansion of the repeating trinucleotides, TGC, was found to be even more predictive of disease. We performed comprehensive sequencing of the TCF4 gene region in order to identify the best marker for FECD within TCF4 and to identify other novel variants that may be associated with FECD.

methodsLeukocyte DNA was isolated from 68 subjects with FECD and 16 unaffected individuals. A custom capture panel was used to isolate the region surrounding the two previously validated markers of FECD. Sequencing of the TCF4 coding region, introns and flanking sequence, spanning 465 kb was performed at >1000× average coverage using the Illumina HiSequation 2000.

resultsTGC expansion (>50 repeats) was present in 46 (68%) FECD-affected subjects and one (6%) normal subject. A total of 1866 variants, including 1540 SNVs, were identified. Only two previously reported SNVs resided in the TCF4 coding region, neither of which segregated with disease. No variant, including TGC expansion, correlated perfectly with disease status. Trinucleotide repeat expansion was a better predictor of disease than any other variant.

conclusionsComplete sequencing of the TCF4 genomic region revealed no single causative variant for FECD. The intronic trinucleotide repeat expansion within TCF4 continues to be more strongly associated with FECD than any other genetic variant.

Indexed as

Polymorphism, Single NucleotideAgedBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsDNA PrimersFemaleFuchs' Endothelial DystrophyGenetic MarkersGenotypeHumansIntronsMalePolymerase Chain ReactionSequence Analysis, DNATranscription Factor 4Transcription FactorsBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsDNA PrimersGenetic MarkersTCF4 protein, humanTranscription Factor 4Transcription FactorsFuchs' dystrophyrepeat expansionTCF4transcription factor 4trinucleotide

Identifiers

PMID25168903
PMCPMC4179444
OpenAlexW1969630677

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.