Evidence map›Paper›PMID 25168591›Full record

ArticleVirology journal2014

Influenza polymerase encoding mRNAs utilize atypical mRNA nuclear export.

Sean Larsen, Steven Bui, Veronica Perez, Adeba Mohammad, Hilario Medina-Ramirez, Laura L Newcomb

Open access · goldAbstract read
In one paragraph

Article in Virology journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
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  5. Review
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  9. RNA regulatory processes in RNA virus biology.Wiley interdisciplinary reviews. RNA · 2019
    Review
  10. Article
  11. Article
  12. Multiple nuclear-replicating viruses require the stress-induced protein ZC3H11A for efficient growth.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  13. Article
  14. Article
  15. Article
  16. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Sean Larsen
Steven Bui
Veronica Perez
Adeba Mohammad
Hilario Medina-Ramirez
Laura L NewcombDepartment of Biology, California State University San Bernardino, 5500 University Parkway, San Bernardino, CA 92407, USA. lnewcomb@csusb.edu.
California State University, San Bernardino · US

Funding

CSU San Bernardino Minority Access to Research CareersT34GM083883 · NIGMS · CALIFORNIA STATE UNIV SAN BERNARDINO · PI MCDOUGALL, SANDERS · 2009 to 2019
$3.0M
Influenza Viral RNA Synthesis and ProcessingK22AI074662 · NIAID · CALIFORNIA STATE UNIV SAN BERNARDINO · PI NEWCOMB, LAURA LYNN · 2008 to 2009
$284k
NIAID NIH HHS K22 AI074662NIAID NIH HHS K22AI074662NICHD NIH HHS HD0522368NIGMS NIH HHS T34 GM083883NIGMS NIH HHS T34GM083883
6 · The paper itself

Abstract

backgroundInfluenza is a segmented negative strand RNA virus. Each RNA segment is encapsulated by influenza nucleoprotein and bound by the viral RNA dependent RNA polymerase (RdRP) to form viral ribonucleoproteins responsible for RNA synthesis in the nucleus of the host cell. Influenza transcription results in spliced mRNAs (M2 and NS2), intron-containing mRNAs (M1 and NS1), and intron-less mRNAs (HA, NA, NP, PB1, PB2, and PA), all of which undergo nuclear export into the cytoplasm for translation. Most cellular mRNA nuclear export is Nxf1-mediated, while select mRNAs utilize Crm1.

methodsHere we inhibited Nxf1 and Crm1 nuclear export prior to infection with influenza A/Udorn/307/1972(H3N2) virus and analyzed influenza intron-less mRNAs using cellular fractionation and reverse transcription-quantitative polymerase chain reaction (RT-qPCR). We examined direct interaction between Nxf1 and influenza intron-less mRNAs using immuno purification of Nxf1 and RT-PCR of associated RNA.

resultsInhibition of Nxf1 resulted in less influenza intron-less mRNA export into the cytoplasm for HA and NA influenza mRNAs in both human embryonic kidney cell line (293 T) and human lung adenocarcinoma epithelial cell line (A549). However, in 293 T cells no change was observed for mRNAs encoding the components of the viral ribonucleoproteins; NP, PA, PB1, and PB2, while in A549 cells, only PA, PB1, and PB2 mRNAs, encoding the RdRP, remained unaffected; NP mRNA was reduced in the cytoplasm. In A549 cells NP, NA, HA, mRNAs were found associated with Nxf1 but PA, PB1, and PB2 mRNAs were not. Crm1 inhibition also resulted in no significant difference in PA, PB1, and PB2 mRNA nuclear export.

conclusionsThese results further confirm Nxf1-mediated nuclear export is functional during the influenza life cycle and hijacked for select influenza mRNA nuclear export. We reveal a cell type difference for Nxf1-mediated nuclear export of influenza NP mRNA, a reminder that cell type can influence molecular mechanisms. Importantly, we conclude that in both A549 and 293 T cells, PA, PB1, and PB2 mRNA nuclear export is Nxf1 and Crm1 independent. Our data support the hypothesis that PA, PB1, and PB2 mRNAs, encoding the influenza RdRP, utilize atypical mRNA nuclear export.

Indexed as

Active Transport, Cell NucleusAntibiotics, AntineoplasticCell LineExportin 1 ProteinFatty Acids, UnsaturatedGene Expression RegulationHumansInfluenza A Virus, H3N2 SubtypeKaryopherinsNucleocytoplasmic Transport ProteinsReceptors, Cytoplasmic and NuclearRNA-Binding ProteinsRNA, MessengerRNA, ViralVirus ReplicationAntibiotics, AntineoplasticExportin 1 ProteinFatty Acids, UnsaturatedKaryopherinsleptomycin BNucleocytoplasmic Transport ProteinsNXF1 protein, humanReceptors, Cytoplasmic and NuclearRNA-Binding ProteinsRNA, MessengerRNA, Viral

Identifiers

PMID25168591
PMCPMC4158059
OpenAlexW2030870962

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.