Evidence map›Paper›PMID 25165982›Full record

ArticlePLoS pathogens2014

P. aeruginosa SGNH hydrolase-like proteins AlgJ and AlgX have similar topology but separate and distinct roles in alginate acetylation.

Perrin Baker, Tyler Ricer, Patrick J Moynihan, Elena N Kitova, Marthe T C Walvoort, Dustin J Little, John C Whitney, Karen Dawson, Joel T Weadge, Howard Robinson and 5 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 73 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Applying a polysaccharide lyase fromApplied and environmental microbiology · 2025
    Article
  6. Advances in alginate biosynthesis: regulation and production inFrontiers in bioengineering and biotechnology · 2025
    Review
  7. Plant Cell Wall PolysaccharidePlants (Basel, Switzerland) · 2024
    Review
  8. Article
  9. Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 8 institutions in 3 countries.

Perrin BakerProgram in Molecular Structure and Function, Research Institute, The Hospital for Sick Children, Toronto, Ontario, Canada.
Tyler RicerProgram in Molecular Structure and Function, Research Institute, The Hospital for Sick Children, Toronto, Ontario, Canada; Department of Biochemistry, Faculty of Medicine, University of Toronto, Toronto, Ontario, Canada.
Patrick J MoynihanDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, Canada.
Elena N KitovaAlberta Glycomics Centre and Department of Chemistry, University of Alberta, Edmonton, Alberta, Canada.
Marthe T C WalvoortLeiden Institute of Chemistry, Leiden University, Leiden, The Netherlands.
Dustin J LittleProgram in Molecular Structure and Function, Research Institute, The Hospital for Sick Children, Toronto, Ontario, Canada; Department of Biochemistry, Faculty of Medicine, University of Toronto, Toronto, Ontario, Canada.
John C WhitneyProgram in Molecular Structure and Function, Research Institute, The Hospital for Sick Children, Toronto, Ontario, Canada; Department of Biochemistry, Faculty of Medicine, University of Toronto, Toronto, Ontario, Canada.
Karen DawsonProgram in Molecular Structure and Function, Research Institute, The Hospital for Sick Children, Toronto, Ontario, Canada; Department of Biochemistry, Faculty of Medicine, University of Toronto, Toronto, Ontario, Canada.
Joel T WeadgeProgram in Molecular Structure and Function, Research Institute, The Hospital for Sick Children, Toronto, Ontario, Canada.
Howard RobinsonPhoton Sciences Division, Brookhaven National Laboratory, Upton, New York, United States of America.
Dennis E OhmanDepartment of Microbiology and Immunology, Virginia Commonwealth University Medical Center and McGuire Veterans Affairs Medical Center, Richmond, Virginia, United States of America.
Jeroen D C CodéeLeiden Institute of Chemistry, Leiden University, Leiden, The Netherlands.
John S KlassenAlberta Glycomics Centre and Department of Chemistry, University of Alberta, Edmonton, Alberta, Canada.
Anthony J ClarkeDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, Canada.
P Lynne HowellProgram in Molecular Structure and Function, Research Institute, The Hospital for Sick Children, Toronto, Ontario, Canada; Department of Biochemistry, Faculty of Medicine, University of Toronto, Toronto, Ontario, Canada.
University of Toronto · CAHospital for Sick Children · CALeiden University · NLUniversity of Guelph · CAAlberta Glycomics Centre · CABrookhaven National Laboratory · USUniversity of Alberta · CAVirginia Commonwealth University Medical Center · US

Funding

X-RAY STRUCTURE OF RIFM PROTEIN FROM THE BIOSYNTHESIS PATHWAY OF THE ANSAMYCIN AP41RR012408 · NCRR · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI ORVILLE, ALLEN M · 1998 to 2011
$32.2M
Life Science and Biomedical technology Research center at NSLS-II LSBRP41GM111244 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI MCSWEENEY, SEAN · 2014 to 2018
$16.4M
Macromolecular Crystallography at the National Synchrotron Light SourceP41GM103473 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI SWEET, ROBERT M · 2012 to 2013
$4.9M
GENETICS OF ALGINATE BIOSYNTHESIS IN P. AERUGINOSAR01AI019146 · NIAID · VIRGINIA COMMONWEALTH UNIVERSITY · PI OHMAN, DENNIS EDWARD · 1985 to 2011
$2.7M
Activation of Alginate Genes in Pseudomonas aeruginosaR56AI019146 · NIAID · VIRGINIA COMMONWEALTH UNIVERSITY · PI OHMAN, DENNIS EDWARD · 2006 to 2013
$682k
BLRD VA I01 BX000477NCRR NIH HHS P41 RR012408NCRR NIH HHS P41RR012408NIAID NIH HHS AI19146NIAID NIH HHS R01 AI019146NIAID NIH HHS R56 AI019146NIGMS NIH HHS P41 GM103473NIGMS NIH HHS P41GM103473NIGMS NIH HHS P41 GM111244
6 · The paper itself

Abstract

The O-acetylation of polysaccharides is a common modification used by pathogenic organisms to protect against external forces. Pseudomonas aeruginosa secretes the anionic, O-acetylated exopolysaccharide alginate during chronic infection in the lungs of cystic fibrosis patients to form the major constituent of a protective biofilm matrix. Four proteins have been implicated in the O-acetylation of alginate, AlgIJF and AlgX. To probe the biological function of AlgJ, we determined its structure to 1.83 Å resolution. AlgJ is a SGNH hydrolase-like protein, which while structurally similar to the N-terminal domain of AlgX exhibits a distinctly different electrostatic surface potential. Consistent with other SGNH hydrolases, we identified a conserved catalytic triad composed of D190, H192 and S288 and demonstrated that AlgJ exhibits acetylesterase activity in vitro. Residues in the AlgJ signature motifs were found to form an extensive network of interactions that are critical for O-acetylation of alginate in vivo. Using two different electrospray ionization mass spectrometry (ESI-MS) assays we compared the abilities of AlgJ and AlgX to bind and acetylate alginate. Binding studies using defined length polymannuronic acid revealed that AlgJ exhibits either weak or no detectable polymer binding while AlgX binds polymannuronic acid specifically in a length-dependent manner. Additionally, AlgX was capable of utilizing the surrogate acetyl-donor 4-nitrophenyl acetate to catalyze the O-acetylation of polymannuronic acid. Our results, combined with previously published in vivo data, suggest that the annotated O-acetyltransferases AlgJ and AlgX have separate and distinct roles in O-acetylation. Our refined model for alginate acetylation places AlgX as the terminal acetlytransferase and provides a rationale for the variability in the number of proteins required for polysaccharide O-acetylation.

Indexed as

AcetylationAlginatesBacterial ProteinsBase SequenceGlucuronic AcidHexuronic AcidsMolecular Sequence DataProtein Structure, QuaternaryPseudomonas aeruginosaAlginatesAlgJ protein, Pseudomonas aeruginosaBacterial ProteinsGlucuronic AcidHexuronic Acids

Identifiers

PMID25165982
PMCPMC4148444
OpenAlexW2029373994

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.