Evidence map›Paper›PMID 25165442›Full record

ArticleFrontiers in computational neuroscience2014

Data-driven inference of network connectivity for modeling the dynamics of neural codes in the insect antennal lobe.

Eli Shlizerman, Jeffrey A Riffell, J Nathan Kutz

Abstract read
In one paragraph

Article in Frontiers in computational neuroscience, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Unsupervised learning of control signals and their encodings inJournal of the Royal Society, Interface · 2020
    Article
  2. Article
  3. Neural Circuit Dynamics for Sensory Detection.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2020
    Article
  4. Neural Interactome: Interactive Simulation of a Neuronal System.Frontiers in computational neuroscience · 2019
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Dimensionality reduction in neuroscience.Current biology : CB · 2016
    Article
  11. Nonlinear control of networked dynamical systems.IEEE transactions on network science and engineering
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Eli ShlizermanDepartment of Applied Mathematics, University of Washington Seattle, WA, USA.
Jeffrey A RiffellDepartment of Biology, University of Washington Seattle, WA, USA.
J Nathan KutzDepartment of Applied Mathematics, University of Washington Seattle, WA, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The antennal lobe (AL), olfactory processing center in insects, is able to process stimuli into distinct neural activity patterns, called olfactory neural codes. To model their dynamics we perform multichannel recordings from the projection neurons in the AL driven by different odorants. We then derive a dynamic neuronal network from the electrophysiological data. The network consists of lateral-inhibitory neurons and excitatory neurons (modeled as firing-rate units), and is capable of producing unique olfactory neural codes for the tested odorants. To construct the network, we (1) design a projection, an odor space, for the neural recording from the AL, which discriminates between distinct odorants trajectories (2) characterize scent recognition, i.e., decision-making based on olfactory signals and (3) infer the wiring of the neural circuit, the connectome of the AL. We show that the constructed model is consistent with biological observations, such as contrast enhancement and robustness to noise. The study suggests a data-driven approach to answer a key biological question in identifying how lateral inhibitory neurons can be wired to excitatory neurons to permit robust activity patterns.

Indexed as

contrast enhancementdata-driven modelinginsect olfactionneuronal networksodor discriminationolfactory neural codingreduced dynamics

Identifiers

PMID25165442
PMCPMC4131428

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.