Evidence map›Paper›PMID 25164699›Full record

ArticleAnnals of botany2014

Structures formed by a cell membrane-associated arabinogalactan-protein on graphite or mica alone and with Yariv phenylglycosides.

Li Hong Zhou, Renate A Weizbauer, Srikanth Singamaneni, Feng Xu, Guy M Genin, Barbara G Pickard

Open access · bronzeAbstract read
In one paragraph

Article in Annals of botany, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.4field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Li Hong ZhouGladys Levis Allen Laboratory of Plant Sensory Physiology, Biology Department, Washington University in St. Louis, St. Louis, MO, USA Department of Mechanical Engineering & Materials Science, Washington University in St. Louis, St. Louis, MO, USA Biomedical Engineering & Biomechanics Center, Xi'an Jiaotong University, Xi'an, China.
Renate A WeizbauerGladys Levis Allen Laboratory of Plant Sensory Physiology, Biology Department, Washington University in St. Louis, St. Louis, MO, USA Department of Mechanical Engineering & Materials Science, Washington University in St. Louis, St. Louis, MO, USA Carnegie Institution, Department of Plant Biology, Stanford, CA, USA.
Srikanth SingamaneniDepartment of Mechanical Engineering & Materials Science, Washington University in St. Louis, St. Louis, MO, USA.
Feng XuBiomedical Engineering & Biomechanics Center, Xi'an Jiaotong University, Xi'an, China School of Life Science & Technology, Xi'an Jiaotong University, Xi'an, China.
Guy M GeninDepartment of Mechanical Engineering & Materials Science, Washington University in St. Louis, St. Louis, MO, USA.
Barbara G PickardGladys Levis Allen Laboratory of Plant Sensory Physiology, Biology Department, Washington University in St. Louis, St. Louis, MO, USA pickard@wustl.edu.
Washington University in St. Louis · USXi'an Jiaotong University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCertain membrane-associated arabinogalactan-proteins (AGPs) with lysine-rich sub-domains participate in plant growth, development and resistance to stress. To complement fluorescence imaging of such molecules when tagged and introduced transgenically to the cell periphery and to extend the groundwork for assessing molecular structure, some behaviours of surface-spread AGPs were visualized at the nanometre scale in a simplified electrostatic environment.

methodsEnhanced green fluorescent protein (EGFP)-labelled LeAGP1 was isolated from Arabidopsis thaliana leaves using antibody-coated magnetic beads, deposited on graphite or mica, and examined with atomic force microscopy (AFM). KEY

resultsWhen deposited at low concentration on graphite, LeAGP can form independent clusters and rings a few nanometres in diameter, often defining deep pits; the aperture of the rings depends on plating parameters. On mica, intermediate and high concentrations, respectively, yielded lacy meshes and solid sheets that could dynamically evolve arcs, rings, 'pores' and 'co-pores', and pits. Glucosyl Yariv reagent combined with the AGP to make very large and distinctive rings.

conclusionsDiverse cell-specific nano-patterns of native lysine-rich AGPs are expected at the wall-membrane interface and, while there will not be an identical patterning in different environmental settings, AFM imaging suggests protein tendencies for surficial organization and thus opens new avenues for experimentation. Nanopore formation with Yariv reagents suggests how the reagent might bind with AGP to admit Ca(2+) to cells and hints at ways in which AGP might be structured at some cell surfaces.

Indexed as

Aluminum SilicatesArabidopsisCell MembraneCell WallGalactansGenes, ReporterGlucosidesGraphiteMucoproteinsNanoporesPhloroglucinolPlant ProteinsRecombinant Fusion ProteinsAluminum Silicatesarabinogalactanarabinogalactan proteinsGalactansGlucosidesGraphitemicaMucoproteinsPhloroglucinolPlant ProteinsRecombinant Fusion ProteinsYariv reagentArabidopsis thalianaatomic force microscopyEGFPglycoprotein clusterglycoprotein meshLeAGP1lysine-rich arabinogalactan-proteinnanoporeperiplasmPlant cell wallsYariv phenylglycoside

Identifiers

PMID25164699
PMCPMC4195565
OpenAlexW2328160410

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.