Evidence map›Paper›PMID 25164601›Full record

ArticleAnnals of neurology2014

Sequencing of Charcot-Marie-Tooth disease genes in a toxic polyneuropathy.

Andreas S Beutler, Amit A Kulkarni, Rahul Kanwar, Christopher J Klein, Terry M Therneau, Rui Qin, Michaela S Banck, Ganesh K Boora, Kathryn J Ruddy, Yanhong Wu and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in Annals of neurology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed, 1 pooled it
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 1 synthesis or guideline pooled it, 76 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 10 institutions in 2 countries.

Andreas S BeutlerDepartment of Oncology, Mayo Clinic, Rochester, MN; Cancer Center, Mayo Clinic, Rochester, MN.
Amit A Kulkarni
Rahul Kanwar
Christopher J Klein
Terry M Therneau
Rui Qin
Michaela S Banck
Ganesh K Boora
Kathryn J Ruddy
Yanhong Wu
Regenia L Smalley
Julie M Cunningham
Nguyet Anh Le-Lindqwister
Peter Beyerlein
Gary P Schroth
Anthony J Windebank
Stephan Züchner
Charles L Loprinzi
Mayo Clinic in Arizona · USMayo Clinic in Florida · USNorth Central Cancer Treatment Group · USAlliance for Clinical Trials in Oncology · USDr. John T. Macdonald Foundation · USIllumina (United States) · USIowa Oncology Research Association · USMayo Clinic · USTechnical University of Applied Sciences Wildau · DEWinnMed · US

Funding

Women's Cancer ProgramP30CA015083 · NCI · MAYO CLINIC ROCHESTER · PI Felicity Enders · 1985 to 2026
$151.3M
Collaborations and NCORP Collective ManagementUG1CA189823 · NCI · MAYO CLINIC ROCHESTER · PI Evanthia Galanis, Olwen Hahn · 2014 to 2026
$120.6M
SUPPLEMENTU10CA037404 · NCI · MAYO CLINIC ROCHESTER · PI LOPRINZI, CHARLES L · 1985 to 2014
$34.8M
GENOME STUDIES IN HEREDITARY SPASTIC PARAPLEGIA - beyond the exomeR01NS072248 · NINDS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI Stephan Zuchner · 2011 to 2026
$9.2M
Synergizing genome sequencing with advances in patient reprted outcomes (PRO)R01NR015259 · NINR · MAYO CLINIC ROCHESTER · PI RUDDY, KATHRYN JEAN, SLOAN, JEFF A. · 2015 to 2020
$3.2M
Genomic Studies in Charcot-Marie-Tooth DiseaseR01NS075764 · NINDS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI SHY, MICHAEL E., ZUCHNER, STEPHAN · 2012 to 2016
$3.0M
sc-rAAV8 via Lumbar Puncture as Spinal Analgesic Drug Delivery SystemsR01NS063022 · NINDS · MAYO CLINIC ROCHESTER · PI BEUTLER, ANDREAS S. · 2009 to 2013
$2.1M
NEUROPHYSIOLOGY OF ORGANOTYPIC CULTURES OF BASAL GANGLIAK07NS000657 · NINDS · MOUNT SINAI SCHOOL OF MEDICINE OF CUNY · PI HEYER, ERIC JOHN · 1985 to 1985
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NCI NIH HHS CA15083NCI NIH HHS P30 CA015083NCI NIH HHS U10 CA037404NCI NIH HHS U10CA37404-27NCI NIH HHS UG1 CA189823NINDS NIH HHS R01 NS063022NINDS NIH HHS R01NS063022NINDS NIH HHS R01 NS072248NINDS NIH HHS R01NS072248NINDS NIH HHS R01 NS075764NINDS NIH HHS R01NS075764NINDS NIH HHS U54NS0657NINR NIH HHS R01 NR015259
6 · The paper itself

Abstract

objectiveMutations in Charcot-Marie-Tooth disease (CMT) genes are the cause of rare familial forms of polyneuropathy. Whether allelic variability in CMT genes is also associated with common forms of polyneuropathy-considered "acquired" in medical parlance-is unknown. Chemotherapy-induced peripheral neuropathy (CIPN) occurs commonly in cancer patients and is individually unpredictable. We used CIPN as a clinical model to investigate the association of non-CMT polyneuropathy with CMT genes.

methodsA total of 269 neurologically asymptomatic cancer patients were enrolled in the clinical trial Alliance N08C1 to receive the neurotoxic drug paclitaxel, while undergoing prospective assessments for polyneuropathy. Forty-nine CMT genes were analyzed by targeted massively parallel sequencing of genomic DNA from patient blood.

resultsA total of 119 (of 269) patients were identified from the 2 ends of the polyneuropathy phenotype distribution: patients that were most and least susceptible to paclitaxel polyneuropathy. The CMT gene PRX was found to be deleteriously mutated in patients who were susceptible to CIPN but not in controls (p = 8 × 10(-3)). Genetic variation in another CMT gene, ARHGEF10, was highly significantly associated with CIPN (p = 5 × 10(-4)). Three nonsynonymous recurrent single nucleotide variants contributed to the ARHGEF10 signal: rs9657362, rs2294039, and rs17683288. Of these, rs9657362 had the strongest effect (odds ratio = 4.8, p = 4 × 10(-4)).

interpretationThe results reveal an association of CMT gene allelic variability with susceptibility to CIPN. The findings raise the possibility that other acquired polyneuropathies may also be codetermined by genetic etiological factors, of which some may be related to genes already known to cause the phenotypically related Mendelian disorders of CMT.

Indexed as

AllelesAntineoplastic AgentsAntineoplastic Agents, PhytogenicCharcot-Marie-Tooth DiseaseFemaleHumansMaleMiddle AgedMutationNeoplasmsPaclitaxelPolyneuropathiesProspective StudiesRho Guanine Nucleotide Exchange FactorsAntineoplastic AgentsAntineoplastic Agents, PhytogenicARHGEF10 protein, humanPaclitaxelRho Guanine Nucleotide Exchange Factors

Identifiers

PMID25164601
PMCPMC4388308
OpenAlexW1593802128

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.