Evidence map›Paper›PMID 25162587›Full record

ArticlePloS one2014

Simulated cytoskeletal collapse via tau degradation.

Austin Sendek, Henry R Fuller, N Robert Hayre, Rajiv R P Singh, Daniel L Cox

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Austin SendekDepartment of Applied Physics, Stanford University, Palo Alto, California, United States of America; Department of Physics, University of California Davis, Davis, California, United States of America; Institute for Complex Adaptive Matter, University of California Davis, Davis, California, United States of America.
Henry R FullerDepartment of Physics, University of California Davis, Davis, California, United States of America; Institute for Complex Adaptive Matter, University of California Davis, Davis, California, United States of America.
N Robert HayreDepartment of Physics, University of California Davis, Davis, California, United States of America; Institute for Complex Adaptive Matter, University of California Davis, Davis, California, United States of America.
Rajiv R P SinghDepartment of Physics, University of California Davis, Davis, California, United States of America; Institute for Complex Adaptive Matter, University of California Davis, Davis, California, United States of America.
Daniel L CoxDepartment of Physics, University of California Davis, Davis, California, United States of America; Institute for Complex Adaptive Matter, University of California Davis, Davis, California, United States of America.
University of California, Davis · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We present a coarse-grained two dimensional mechanical model for the microtubule-tau bundles in neuronal axons in which we remove taus, as can happen in various neurodegenerative conditions such as Alzheimers disease, tauopathies, and chronic traumatic encephalopathy. Our simplified model includes (i) taus modeled as entropic springs between microtubules, (ii) removal of taus from the bundles due to phosphorylation, and (iii) a possible depletion force between microtubules due to these dissociated phosphorylated taus. We equilibrate upon tau removal using steepest descent relaxation. In the absence of the depletion force, the transverse rigidity to radial compression of the bundles falls to zero at about 60% tau occupancy, in agreement with standard percolation theory results. However, with the attractive depletion force, spring removal leads to a first order collapse of the bundles over a wide range of tau occupancies for physiologically realizable conditions. While our simplest calculations assume a constant concentration of microtubule intercalants to mediate the depletion force, including a dependence that is linear in the detached taus yields the same collapse. Applying percolation theory to removal of taus at microtubule tips, which are likely to be the protective sites against dynamic instability, we argue that the microtubule instability can only obtain at low tau occupancy, from 0.06-0.30 depending upon the tau coordination at the microtubule tips. Hence, the collapse we discover is likely to be more robust over a wide range of tau occupancies than the dynamic instability. We suggest in vitro tests of our predicted collapse.

Indexed as

Models, BiologicalAxonsBiomechanical PhenomenaComputer SimulationHumansMicrotubulesPhosphorylationTauopathiestau ProteinsThermodynamicstau Proteins

Identifiers

PMID25162587
PMCPMC4146510
OpenAlexW2111781561

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.