Evidence map›Paper›PMID 25162177›Full record

ArticleACS synthetic biology2015

Forcing the issue: aromatic tuning facilitates stimulus-independent modulation of a two-component signaling circuit.

Morten H H Nørholm, Gunnar von Heijne, Roger R Draheim

Abstract read
In one paragraph

Article in ACS synthetic biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Morten H H Nørholm†Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kogle Alle 6, DK-2970 Hørsholm, Denmark.
Gunnar von Heijne‡Department of Biochemistry and Biophysics, Stockholm University, Svante Arrhenius väg 16C, SE-10691 Stockholm, Sweden.
Roger R Draheim

Funding

NIAID NIH HHS AI075573
6 · The paper itself

Abstract

Two-component signaling circuits allow bacteria to detect and respond to external stimuli. Unfortunately, the input stimulus remains unidentified for the majority of these circuits. Therefore, development of a synthetic method for stimulus-independent modulation of these circuits is highly desirable because particular physiological or developmental processes could be controlled for biotechnological purposes without the need to identify the stimulus itself. Here, we demonstrate that aromatic tuning, i.e., repositioning the aromatic residues commonly found at the cytoplasmic end of the receptor (EnvZ) transmembrane domain, facilitates stimulus-independent modulation of signal output from the EnvZ/OmpR osmosensing circuit of Escherichia coli. We found that these osmosensing circuits retained the ability to respond appropriately to increased external osmolarity, suggesting that the tuned receptors were not locked in a single conformation. We also noted that circuits containing aromatically tuned variants became more sensitive to changes in the receptor concentration than their wild-type counterpart, suggesting a new way to study mechanisms underpinning receptor concentration-dependent robustness. We believe that aromatic tuning has several advantages compared to previous methods aimed at stimulus-independent modulation of receptors and that it will be generally applicable to a wide-range of two-component circuits.

Indexed as

Bacterial Outer Membrane ProteinsBacterial ProteinsEscherichia coliEscherichia coli ProteinsMultienzyme ComplexesTrans-ActivatorsProtein Structure, TertiarySignal TransductionBacterial Outer Membrane ProteinsBacterial ProteinsenvZ protein, E coliEscherichia coli ProteinsMultienzyme Complexesosmolarity response regulator proteinsTrans-Activatorsaromatic tuningconcentration-dependent robustnessstimulus-independent modulationtwo-component circuit engineering

Identifiers

PMID25162177
PMCPMC4410910

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.