Evidence map›Paper›PMID 25160899›Full record

ArticleGenes, brain, and behavior2014

Genetics of gene expression characterizes response to selective breeding for alcohol preference.

P L Hoffman, L M Saba, S Flink, N J Grahame, K Kechris, B Tabakoff

Abstract read
In one paragraph

Article in Genes, brain, and behavior, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

P L HoffmanDepartment of Pharmacology, University of Colorado School of Medicine, Aurora, CO.
L M Saba
S Flink
N J Grahame
K Kechris
B Tabakoff

Funding

Colorado Clinical and Translational Sciences InstituteUL1TR001082 · NCATS · UNIVERSITY OF COLORADO DENVER · PI SOKOL, RONALD J. · 2013 to 2017
$48.0M
Translational Research and Science Education (OUT)P60AA007611 · NIAAA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI Marian Lee Logrip · 2003 to 2026
$45.5M
The Heritable Transcriptome and AlcoholismR24AA013162 · NIAAA · UNIVERSITY OF COLORADO DENVER · PI HOFFMAN, PAULA, SABA, LAURA MAREN · 2001 to 2021
$14.2M
ZEBRAFISH TRANSGENIC CORE - ROCKY MOUNTAIN NEUROLOGICAL DISORDERS CORE CENTERP30NS048154 · NINDS · UNIVERSITY OF COLORADO DENVER · PI RIBERA, ANGELES BADELL · 2004 to 2020
$10.1M
RAT RESEARCH COMPONENTP50AA007611 · NIAAA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI LUMENG, LAWRENCE · 1987 to 2002
$5.3M
Rodents with Genetic Differences in Alcohol PreferenceR24AA015512 · NIAAA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI BELL, RICHARD LOWELL · 2005 to 2014
$5.1M
BEHAVIORAL PHARMACOGENETICS OF DRUG AND ALCOHOL ABUSET32AA007464 · NIAAA · UNIVERSITY OF COLORADO DENVER · PI HOFFMAN, PAULA · 1987 to 2017
$4.8M
RNA Interference CoreU01AA016654 · NIAAA · UNIVERSITY OF ILLINOIS AT CHICAGO · PI LASEK, AMY WOLVEN · 2006 to 2015
$3.4M
Rodents with Genetic Differences in Alcohol PreferenceU24AA015512 · NIAAA · INDIANA UNIVERSITY INDIANAPOLIS · PI BELL, RICHARD LOWELL · 2015 to 2019
$2.7M
Regulation of alcohol consumption by chromatin modificationU01AA016649 · NIAAA · UNIVERSITY OF COLORADO DENVER · PI HOFFMAN, PAULA, TABAKOFF, BORIS · 2006 to 2013
$2.4M
Colorado Gene Array CoreU01AA016663 · NIAAA · UNIVERSITY OF COLORADO DENVER · PI TABAKOFF, BORIS · 2006 to 2010
$2.2M
Genomic regulatory sequence analysis for alcohol-related phenotypesK01AA016922 · NIAAA · UNIVERSITY OF COLORADO DENVER · PI KECHRIS-MAYS, KATHERINA · 2007 to 2011
$737k
NCATS NIH HHS UL1 TR001082NCATS NIH HHS UL1 TR001802NIAAA NIH HHS K01 AA016922NIAAA NIH HHS K01AA 016922NIAAA NIH HHS P50 AA007611NIAAA NIH HHS P60 AA007611NIAAA NIH HHS P60AA007611NIAAA NIH HHS R24 AA013162NIAAA NIH HHS R24AA013162NIAAA NIH HHS R24 AA015512NIAAA NIH HHS R24AA015512NIAAA NIH HHS T32 AA007464NIAAA NIH HHS U01 AA016649NIAAA NIH HHS U01AA016649NIAAA NIH HHS U01 AA016654NIAAA NIH HHS U01AA016654NIAAA NIH HHS U01 AA016663NIAAA NIH HHS U01AA016663NIAAA NIH HHS U24 AA015512NINDS NIH HHS P30 NS048154NINDS NIH HHS P30NS048154
6 · The paper itself

Abstract

Numerous selective breeding experiments have been performed with rodents, in an attempt to understand the genetic basis for innate differences in preference for alcohol consumption. Quantitative trait locus (QTL) analysis has been used to determine regions of the genome that are associated with the behavioral difference in alcohol preference/consumption. Recent work suggests that differences in gene expression represent a major genetic basis for complex traits. Therefore, the QTLs are likely to harbor regulatory regions (eQTLs) for the differentially expressed genes that are associated with the trait. In this study, we examined brain gene expression differences over generations of selection of the third replicate lines of high and low alcohol-preferring (HAP3 and LAP3) mice, and determined regions of the genome that control the expression of these differentially expressed genes (de eQTLs). We also determined eQTL regions (rv eQTLs) for genes that showed a decrease in variance of expression levels over the course of selection. We postulated that de eQTLs that overlap with rv eQTLs, and also with phenotypic QTLs, represent genomic regions that are affected by the process of selection. These overlapping regions controlled the expression of candidate genes (that displayed differential expression and reduced variance of expression) for the predisposition to differences in alcohol consumption by the HAP3/LAP3 mice.

Indexed as

Gene ExpressionQuantitative Trait LociAlcohol DrinkingAnimalsBreedingChoice BehaviorGene Expression ProfilingGenotypeMicePhenotypeAlcohol preferencegenetics of gene expressionHAP and LAP miceQTL analysisselective breeding

Identifiers

PMID25160899
PMCPMC4241152

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.