ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2014
Construction of a dense SNP map of a highly heterozygous diploid potato population and QTL analysis of tuber shape and eye depth.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.
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34 citing papers in PubMed.
- Identification and transcriptome analysis of a major locus for eye depth in tetraploid potato Jinshu 16.BMC plant biology · 2026Article
- Potato dihaploids uncover diverse alleles to facilitate diploid potato breeding.The plant genome · 2026Article
- Genome-wide analysis of non-coding RNA reveals the role of a novel miR319c for tuber dormancy release process in potato.Horticulture research · 2025Article
- Genomic prediction for potato (Solanum tuberosum) quality traits improved through image analysis.The plant genome · 2024Article
- Integrative multi-omics analysis reveals genetic and heterotic contributions to male fertility and yield in potato.Nature communications · 2024Article
- Genotyping-by-sequencing targets genic regions and improves resolution of genome-wide association studies in autotetraploid potato.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- ScabyNet, a user-friendly application for detecting common scab in potato tubers using deep learning and morphological traits.Scientific reports · 2024Article
- QTL identified that influence tuber length-width ratio, degree of flatness, tuber size, and specific gravity in a russet-skinned, tetraploid mapping population.Frontiers in plant science · 2024Article
- Allelic variants of a potatoFood and energy security · 2023Article
- Insights into the genetic determination of tuber shape and eye depth in potato natural population based on autotetraploid potato genome.Frontiers in plant science · 2023Article
- Identification and validation of QTLs for tuber quality related traits in greater yam (Dioscorea alata L.).Scientific reports · 2022Article
- Fine Mapping and Candidate Gene Prediction of Tuber Shape ControllingInternational journal of molecular sciences · 2022Article
- Genomic regions associated with tuber traits in tetraploid potatoes and identification of superior clones for breeding purposes.Frontiers in plant science · 2022Article
- QTL analysis of tuber shape in a diploid potato population.Frontiers in plant science · 2022Article
- Linkage and QTL mapping for tuber shape and specific gravity in a tetraploid mapping population of potato representing the russet market class.BMC plant biology · 2021Article
- Article
- Toward the Design of Potato Tolerant to Abiotic Stress.Methods in molecular biology (Clifton, N.J.) · 2021Article
- Multi-dimensional machine learning approaches for fruit shape phenotyping in strawberry.GigaScience · 2020Article
- Natural resistance to Potato virus Y in Solanum tuberosum Group Phureja.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
- A member of the TERMINAL FLOWER 1/CENTRORADIALIS gene family controls sprout growth in potato tubers.Journal of experimental botany · 2019Article
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Authors and funding
7 authors.
Funding
Abstract
key messageGeneration of a dense SNP-based linkage map of a diploid potato population and identification of major QTLs for tuber shape and eye depth on chromosomes 2 and 10. This paper reports the construction of a genetic map of a highly heterozygous full-sib diploid potato population (06H1) based on the use of a set of 8,303 single nucleotide polymorphism (SNP) markers. The map contains 1,355 distinct loci and 2,157 SNPs, 802 of which co-segregate with other markers. We find high levels of collinearity between the 12 chromosomal maps with a recently improved version of the potato genome assembly, with the expected genetic clustering in centromeric regions. The linkage maps are used in combination with highly detailed phenotypic assessments conducted over two growing seasons to perform quantitative trait loci analysis of two important potato traits, tuber shape and eye depth. The major loci segregating for tuber shape in 06H1 map to loci on chromosomes 2 and 10, with smaller effects mapping to three other chromosomes. A major locus for tuber eye depth co-locates with the tuber shape locus on chromosome 10. To assess when tuber shape is established in the developing tuber, we have performed staged observations of tuber formation. Our observations suggest that tuber shape is determined very early in tuber development.
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