Evidence map›Paper›PMID 25158176›Full record

ArticleConnective tissue research2014

Ameloblast transcriptome changes from secretory to maturation stages.

James P Simmer, Amelia S Richardson, Shih-Kai Wang, Bryan M Reid, Yongsheng Bai, Yuanyuan Hu, Jan C-C Hu

Open access · greenAbstract read
In one paragraph

Article in Connective tissue research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 23 citations in OpenAlex.

  1. Review
  2. Posteruptive Loss of Proteins in Porcine Enamel.Journal of dental research · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
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  10. Article
  11. MSX2 in ameloblast cell fate and activity.Frontiers in physiology · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

James P SimmerDepartment of Biologic and Materials Sciences, University of Michigan School of Dentistry , Ann Arbor, MI , USA .
Amelia S Richardson
Shih-Kai Wang
Bryan M Reid
Yongsheng Bai
Yuanyuan Hu
Jan C-C Hu
University of Michigan–Ann Arbor · USUniversity of Wisconsin–Madison · US

Funding

Proteomics and Genetics of Enamel and DentinR01DE015846 · NIDCR · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HU, JAN CHING CHUN · 2004 to 2019
$5.7M
Functional Studies of Kallikrein 4R01DE019775 · NIDCR · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SIMMER, JAMES P · 2009 to 2013
$1.8M
Genetic Mechanisms of Amelogenesis ImperfectaR56DE015846 · NIDCR · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HU, JAN CHING CHUN · 2021 to 2021
$402k
NIDCR NIH HHS DE015846NIDCR NIH HHS DE019775NIDCR NIH HHS R01 DE015846NIDCR NIH HHS R01 DE019775NIDCR NIH HHS R56 DE015846
6 · The paper itself

Abstract

The purpose of this study was to identify the major molecular components in the secretory and maturation stages of amelogenesis through transcriptome analyses. Ameloblasts (40 sections per age group) were laser micro-dissected from Day 5 (secretory stage) and Days 11-12 (maturation stage) first molars. PolyA+ RNA was isolated from the lysed cells, converted to cDNA, and amplified to generate a cDNA library. DNA sequences were obtained using next generation sequencing and analyzed to identify genes whose expression had increased or decreased at least 1.5-fold in maturation stage relative to secretory stage ameloblasts. Among the 9198 genes that surpassed the quality threshold, 373 showed higher expression in secretory stage, while 614 genes increased in maturation stage ameloblasts. The results were cross-checked against a previously published transcriptome generated from tissues overlying secretory and maturation stage mouse incisor enamel and 34 increasing and 26 decreasing expressers common to the two studies were identified. Expression of F2r, which encodes protease activated receptor 1 (PAR1) that showed 10-fold higher expression during the secretory stage in our transcriptome analysis, was characterized in mouse incisors by immunohistochemistry. PAR1 was detected in secretory, but not maturation stage ameloblasts. We conclude that transcriptome analyses are a good starting point for identifying genes/proteins that are critical for proper dental enamel formation and that PAR1 is specifically expressed by secretory stage ameloblasts.

Indexed as

Gene Expression ProfilingAmeloblastsAmelogenesisAnimalsDental Enamel ProteinsEnamel OrganHigh-Throughput Nucleotide SequencingMiceTranscriptomeDental Enamel ProteinsAmelogenesisenamelF2RORAI1PAR1STIM1

Identifiers

PMID25158176
PMCPMC4252044
OpenAlexW2026690575

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.