ArticlePloS one2014
Genome-wide transcriptional profiles of the berry skin of two red grape cultivars (Vitis vinifera) in which anthocyanin synthesis is sunlight-dependent or -independent.
Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers, 1 of them a synthesis that pooled it.
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Who cites it
22 citing papers in PubMed, 1 synthesis or guideline pooled it, 40 citations in OpenAlex.
- Grape Berry Secondary Metabolites and Their Modulation by Abiotic Factors in a Climate Change Scenario-A Review.Frontiers in plant science · 2021Pooled it
- Tailored UV-A Irradiation and Callus Selection Enable Distinct Flavonoid Profile Production in Grape Cell Cultures.Foods (Basel, Switzerland) · 2026Article
- Integrated Metabolomic and Transcriptomic Analysis Reveals the Roles of Cutin, Suberin, and Flavonoid Metabolism in Apple Peel Deterioration Under Non-Bagging Cultivation.Plants (Basel, Switzerland) · 2025Article
- The PpAHL17-PpHYH module is involved in light-independent anthocyanin accumulation in fruit peel of Prunus persica.Plant cell reports · 2025Article
- Article
- Light Regulation of LoCOP1 and Its Role in Floral Scent Biosynthesis inPlants (Basel, Switzerland) · 2023Article
- Integrated Approach from Sample-to-Answer for Grapevine Varietal Identification on a Portable Graphene Sensor Chip.ACS sensors · 2023Article
- Anthocyanin Accumulation and Molecular Analysis of Correlated Genes by Metabolomics and Transcriptomics in Sister Line Apple Cultivars.Life (Basel, Switzerland) · 2022Article
- Clarifying the mechanisms of the light-induced color formation of apple peel under dark conditions through metabolomics and transcriptomic analyses.Frontiers in plant science · 2022Article
- Advances in genomics for diversity studies and trait improvement in temperate fruit and nut crops under changing climatic scenarios.Frontiers in plant science · 2022Review
- Light Microclimate-Driven Changes at Transcriptional Level in Photosynthetic Grape Berry Tissues.Plants (Basel, Switzerland) · 2021Article
- Article
- Comparative physiological, metabolomic, and transcriptomic analyses reveal developmental stage-dependent effects of cluster bagging on phenolic metabolism in Cabernet Sauvignon grape berries.BMC plant biology · 2019Article
- PbCOP1.1 Contributes to the Negative Regulation of Anthocyanin Biosynthesis in Pear.Plants (Basel, Switzerland) · 2019Article
- Omics Approaches for Understanding Grapevine Berry Development: Regulatory Networks Associated with Endogenous Processes and Environmental Responses.Frontiers in plant science · 2017Review
- The Transcriptional Responses and Metabolic Consequences of Acclimation to Elevated Light Exposure in Grapevine Berries.Frontiers in plant science · 2017Article
- System-Level and Granger Network Analysis of Integrated Proteomic and Metabolomic Dynamics Identifies Key Points of Grape Berry Development at the Interface of Primary and Secondary Metabolism.Frontiers in plant science · 2017Article
- Light-induced Variation in Phenolic Compounds in Cabernet Sauvignon Grapes (Frontiers in plant science · 2017Article
- Differential Sensitivity of Fruit Pigmentation to Ultraviolet Light between Two Peach Cultivars.Frontiers in plant science · 2017Article
- Omics studies of citrus, grape and rosaceae fruit trees.Breeding science · 2016Review
Corrections and comments
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Authors and funding
6 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Global gene expression was analyzed in the berry skin of two red grape cultivars, which can ('Jingyan') or cannot ('Jingxiu') synthesize anthocyanins after sunlight exclusion from fruit set until maturity. Gene transcripts responding to sunlight exclusion in 'Jingyan' were less complex than in 'Jingxiu'; 528 genes were induced and 383 repressed in the former, whereas 2655 genes were induced and 205 suppressed in 'Jingxiu'. They were regulated either in the same or opposing manner in the two cultivars, or in only one cultivar. In addition to VvUFGT and VvMYBA1, some candidate genes (e.g. AOMT, GST, and ANP) were identified which are probably involved in the differential responses of 'Jingxiu' and 'Jingyan' to sunlight exclusion. In addition, 26 MYB, 14 bHLH and 23 WD40 genes responded differently to sunlight exclusion in the two cultivars. Interestingly, all of the 189 genes classified as being relevant to ubiquitin-dependent protein degradation were down-regulated by sunlight exclusion in 'Jingxiu', but the majority (162) remained unchanged in 'Jingyan' berry skin. It would be of interest to determine the precise role of the ubiquitin pathway following sunlight exclusion, particularly the role of COP9 signalosome, cullins, RING-Box 1, and COP1-interacting proteins. Only a few genes in the light signal system were found to be regulated by sunlight exclusion in either or both cultivars. This study provides a valuable overview of the transcriptome changes and gives insight into the genetic background that may be responsible for sunlight-dependent versus -independent anthocyanin biosynthesis in berry skin.
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