Evidence map›Paper›PMID 25157442›Full record

ArticleArchives of biochemistry and biophysics2014

The role of biotin and oxamate in the carboxyltransferase reaction of pyruvate carboxylase.

Adam D Lietzan, Yi Lin, Martin St Maurice

Open access · greenAbstract read
In one paragraph

Article in Archives of biochemistry and biophysics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.9field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
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  5. Anemoside B4, a new pyruvate carboxylase inhibitor, alleviates colitis by reprogramming macrophage function.Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Adam D LietzanDepartment of Biological Sciences, Marquette University, Milwaukee, WI 53201, USA.
Yi LinDepartment of Biological Sciences, Marquette University, Milwaukee, WI 53201, USA.
Martin St MauriceDepartment of Biological Sciences, Marquette University, Milwaukee, WI 53201, USA. Electronic address: martin.stmaurice@marquette.edu.
Marquette University · US

Funding

The structure and function of pyruvate carboxylaseR01GM070455 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI RAYMENT, IVAN · 2005 to 2012
$2.7M
NIGMS NIH HHS GM070455NIGMS NIH HHS R01 GM070455
6 · The paper itself

Abstract

Pyruvate carboxylase (PC) is a biotin-dependent enzyme that catalyzes the MgATP-dependent carboxylation of pyruvate to oxaloacetate, an important anaplerotic reaction in central metabolism. During catalysis, carboxybiotin is translocated to the carboxyltransferase domain where the carboxyl group is transferred to the acceptor substrate, pyruvate. Many studies on the carboxyltransferase domain of PC have demonstrated an enhanced oxaloacetate decarboxylation activity in the presence of oxamate and it has been shown that oxamate accepts a carboxyl group from carboxybiotin during oxaloacetate decarboxylation. The X-ray crystal structure of the carboxyltransferase domain from Rhizobium etli PC reveals that oxamate is positioned in the active site in an identical manner to the substrate, pyruvate, and kinetic data are consistent with the oxamate-stimulated decarboxylation of oxaloacetate proceeding through a simple ping-pong bi bi mechanism in the absence of the biotin carboxylase domain. Additionally, analysis of truncated PC enzymes indicates that the BCCP domain devoid of biotin does not contribute directly to the enzymatic reaction and conclusively demonstrates a biotin-independent oxaloacetate decarboxylation activity in PC. These findings advance the description of catalysis in PC and can be extended to the study of related biotin-dependent enzymes.

Indexed as

Binding SitesBiotinCarbon-Nitrogen LigasesCarboxyl and Carbamoyl TransferasesCatalysisCloning, MolecularCrystallography, X-RayLysineModels, ChemicalModels, MolecularMutagenesis, Site-DirectedOxamic AcidProtein Structure, TertiaryPyruvate CarboxylasePyruvic AcidRhizobiumbiocytinBiotinbiotin carboxylaseCarbon-Nitrogen LigasesCarboxyl and Carbamoyl TransferasesLysineN1'-carboxybiotinOxamic AcidPyruvate CarboxylasePyruvic AcidBiotinDecarboxylationEnzymeOxaloacetate decarboxylasePyruvate carboxylase

Identifiers

PMID25157442
PMCPMC4197081
OpenAlexW2031607378

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.