Evidence map›Paper›PMID 25157100›Full record

ArticleThe Journal of biological chemistry2014

Genome-wide approaches reveal functional vascular endothelial growth factor (VEGF)-inducible nuclear factor of activated T cells (NFAT) c1 binding to angiogenesis-related genes in the endothelium.

Jun-ichi Suehiro, Yasuharu Kanki, Chihiro Makihara, Keri Schadler, Mai Miura, Yuuka Manabe, Hiroyuki Aburatani, Tatsuhiko Kodama, Takashi Minami

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 68 citations in OpenAlex.

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  14. Cracking the Endothelial Calcium (CaInternational journal of molecular sciences · 2023
    Review
  15. Review
  16. In Vitro Angiogenesis Inhibition and Endothelial Cell Growth and Morphology.International journal of molecular sciences · 2022
    Article
  17. Article
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  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Jun-ichi SuehiroFrom the Division of Vascular Biology.
Yasuharu KankiFrom the Division of Vascular Biology, Systems Biology, The Research Center for Advanced Science and Technology, The University of Tokyo, Tokyo, 153-8904 Japan and.
Chihiro MakiharaFrom the Division of Vascular Biology.
Keri SchadlerFrom the Division of Vascular Biology, the Department of Cancer Biology, Abramson Family Cancer Research Institute, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania 19104.
Mai MiuraFrom the Division of Vascular Biology.
Yuuka ManabeFrom the Division of Vascular Biology.
Hiroyuki AburataniGenome Science Division, and.
Tatsuhiko KodamaSystems Biology, The Research Center for Advanced Science and Technology, The University of Tokyo, Tokyo, 153-8904 Japan and.
Takashi MinamiFrom the Division of Vascular Biology, minami@med.rcast.u-tokyo.ac.jp.
The University of Tokyo · JPCancer Research Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

VEGF is a key regulator of endothelial cell migration, proliferation, and inflammation, which leads to activation of several signaling cascades, including the calcineurin-nuclear factor of activated T cells (NFAT) pathway. NFAT is not only important for immune responses but also for cardiovascular development and the pathogenesis of Down syndrome. By using Down syndrome model mice and clinical patient samples, we showed recently that the VEGF-calcineurin-NFAT signaling axis regulates tumor angiogenesis and tumor metastasis. However, the connection between genome-wide views of NFAT-mediated gene regulation and downstream gene function in the endothelium has not been studied extensively. Here we performed comprehensive mapping of genome-wide NFATc1 binding in VEGF-stimulated primary cultured endothelial cells and elucidated the functional consequences of VEGF-NFATc1-mediated phenotypic changes. A comparison of the NFATc1 ChIP sequence profile and epigenetic histone marks revealed that predominant NFATc1-occupied peaks overlapped with promoter-associated histone marks. Moreover, we identified two novel NFATc1 regulated genes, CXCR7 and RND1. CXCR7 knockdown abrogated SDF-1- and VEGF-mediated cell migration and tube formation. siRNA treatment of RND1 impaired vascular barrier function, caused RhoA hyperactivation, and further stimulated VEGF-mediated vascular outgrowth from aortic rings. Taken together, these findings suggest that dynamic NFATc1 binding to target genes is critical for VEGF-mediated endothelial cell activation. CXCR7 and RND1 are NFATc1 target genes with multiple functions, including regulation of cell migration, tube formation, and barrier formation in endothelial cells.

Indexed as

Neovascularization, PathologicAnimalsCell MovementChlorocebus aethiopsCoculture TechniquesCOS CellsEndothelial CellsEndothelium, VascularEpigenesis, GeneticFibroblastsGenome-Wide Association StudyHEK293 CellsHomeostasisHumansHuman Umbilical Vein Endothelial CellsMiceCXCR4 protein, humanNFATC1 protein, humanNFATC Transcription FactorsReceptors, CXCR4rho GTP-Binding ProteinsRND1 protein, humanVascular Endothelial Growth Factor AVEGFA protein, humanAngiogenesisChIP-seqEndothelial CellGene TranscriptionGenomicsMicroarrayNFAT Transcription FactorSignalingVascular BiologyVascular Endothelial Growth Factor (VEGF)

Identifiers

PMID25157100
PMCPMC4200259
OpenAlexW2101906215

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.