Evidence map›Paper›PMID 25156440›Full record

ArticleDevelopmental dynamics : an official publication of the American Association of Anatomists2015

A Molecular atlas of Xenopus respiratory system development.

Scott A Rankin, Hong Thi Tran, Marcin Wlizla, Pamela Mancini, Emily T Shifley, Sean D Bloor, Lu Han, Kris Vleminckx, Susan E Wert, Aaron M Zorn

Open access · bronzeAbstract read
In one paragraph

Article in Developmental dynamics : an official publication of the American Association of Anatomists, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
2.9field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 46 citations in OpenAlex.

  1. Origin and stepwise evolution of vertebrate lungs.Nature ecology & evolution · 2025
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  13. Organ-Specific Branching Morphogenesis.Frontiers in cell and developmental biology · 2021
    Review
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  17. Evolutionarily conservedProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  18. [Research progress on transcription factors and signal pathways involved in congenital esophageal atresia].Zhejiang da xue xue bao. Yi xue ban = Journal of Zhejiang University. Medical sciences · 2018
    Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Scott A RankinDivision of Developmental Biology, Perinatal Institute, Cincinnati Children's Hospital, and the Department of Pediatrics, College of Medicine University of Cincinnati, Cincinnati, Ohio.
Hong Thi Tran
Marcin Wlizla
Pamela Mancini
Emily T Shifley
Sean D Bloor
Lu Han
Kris Vleminckx
Susan E Wert
Aaron M Zorn
Cincinnati Children's Hospital Medical Center · USUniversity of Cincinnati · USGhent University · BE

Funding

Pulmonary Development and Disease Pathogenesis Training ProgramT32HL007752 · NHLBI · CINCINNATI CHILDRENS HOSP MED CTR · PI Francis Xavier McCormack, Anne-Karina Theresia Perl · 1994 to 2026
$6.3M
Osr transcription factors regulate embryonic lung developmentR01HL114898 · NHLBI · CINCINNATI CHILDRENS HOSP MED CTR · PI ZORN, AARON M · 2012 to 2016
$2.1M
TRAINING IN DEVELOPMENTAL AND PERINATAL ENDOCRINOLOGYT32HD007463 · NICHD · CINCINNATI CHILDRENS HOSP MED CTR · PI HANDWERGER, STUART · 1994 to 2010
$1.5M
NHLBI NIH HHS R01 HL114898NHLBI NIH HHS T32 HL007752NICHD NIH HHS T32 HD007463NICHD NIH HHS T32 HD07463
6 · The paper itself

Abstract

backgroundRespiratory system development is regulated by a complex series of endoderm-mesoderm interactions that are not fully understood. Recently Xenopus has emerged as an alternative model to investigate early respiratory system development, but the extent to which the morphogenesis and molecular pathways involved are conserved between Xenopus and mammals has not been systematically documented.

resultsIn this study, we provide a histological and molecular atlas of Xenopus respiratory system development, focusing on Nkx2.1+ respiratory cell fate specification in the developing foregut. We document the expression patterns of Wnt/β-catenin, fibroblast growth factor (FGF), and bone morphogenetic protein (BMP) signaling components in the foregut and show that the molecular mechanisms of respiratory lineage induction are remarkably conserved between Xenopus and mice. Finally, using several functional experiments we refine the epistatic relationships among FGF, Wnt, and BMP signaling in early Xenopus respiratory system development.

conclusionsWe demonstrate that Xenopus trachea and lung development, before metamorphosis, is comparable at the cellular and molecular levels to embryonic stages of mouse respiratory system development between embryonic days 8.5 and 10.5. This molecular atlas provides a fundamental starting point for further studies using Xenopus as a model to define the conserved genetic programs controlling early respiratory system development.

Indexed as

Animalsbeta CateninEmbryo, NonmammalianEpistasis, GeneticGene Expression Regulation, DevelopmentalMetamorphosis, BiologicalMiceNuclear ProteinsRespiratory SystemThyroid Nuclear Factor 1Transcription FactorsWnt Signaling PathwayXenopus laevisXenopus Proteinsbeta CateninNkx2-1 protein, mousenkx2-1 protein, XenopusNuclear ProteinsThyroid Nuclear Factor 1Transcription FactorsXenopus ProteinsdevelopmentlungNkx2.1respiratory epitheliumrespiratory systemspecificationtracheaXenopus

Identifiers

PMID25156440
PMCPMC4276498
OpenAlexW1581880599

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.