Evidence map›Paper›PMID 25155436›Full record

ArticleChembiochem : a European journal of chemical biology2014

Traceless semisynthesis of a set of histone 3 species bearing specific lysine methylation marks.

Zhonglei Chen, Adrian T Grzybowski, Alexander J Ruthenburg

Abstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Detection and Quantification of Histone Methyltransferase Activity In Vitro.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  8. Review
  9. Review
  10. Chromatin structure and its chemical modifications regulate the ubiquitin ligase substrate selectivity of UHRF1.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Zhonglei ChenDepartment of Molecular Genetics and Cell Biology, University of Chicago, 920 E. 58th St, Chicago, IL 60637 (USA).
Adrian T Grzybowski
Alexander J Ruthenburg

Funding

Calibrated ChIP-seq: determining local histone modification density genome-wideR21HG007426 · NHGRI · UNIVERSITY OF CHICAGO · PI RUTHENBURG, ALEXANDER JACKSON · 2013 to 2014
$429k
NHGRI NIH HHS R21 HG007426NHGRI NIH HHS R21HG007426
6 · The paper itself

Abstract

Considerable mechanistic insight into the function of histone post-translational modifications and the enzymes that install and remove them derives from in vitro experiments with modified histones, often embedded in nucleosomes. We report the first semisyntheses of native-like histone 3 (H3) bearing tri- and dimethyllysines at position 79 and trimethyllysine at position 36, as well as more facile and traceless semisyntheses of K9 and K27 trimethylated species. These semisyntheses are practical on a multi-milligram scale and can also generate H3 with combinations of marks. Each of these modifications has distinct functional consequences, although the pathways by which H3K36me3 and H3K79me2/3 act have not been entirely mapped. To this end, we demonstrated that our semisynthetic histones, when reconstituted into nucleosomes, are valuable affinity reagents for unbiased binding partner discovery and compare them to their methyllysine analogue (MLA) counterparts at the nucleosome level.

Indexed as

Amino Acid SequenceHeLa CellsHistonesHumansLysineMethylationMolecular Sequence DataNucleosomesProtein BindingProtein Processing, Post-TranslationalHistonesLysineNucleosomestrimethyllysinebinding partner discoverybioorganic chemistryhistone methylationnative chemical ligationprotein engineering

Identifiers

PMID25155436
PMCPMC4415702

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.