Evidence map›Paper›PMID 25155298›Full record

ArticleChembiochem : a European journal of chemical biology2014

Synergistic actions of tailoring enzymes in pradimicin biosynthesis.

Kandy Napan, Shuwei Zhang, Whitney Morgan, Thomas Anderson, Jon Y Takemoto, Jixun Zhan

Abstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
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  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Kandy NapanDepartment of Biological Engineering, Utah State University, 4105 Old Main Hill, Logan, UT 84322 (USA).
Shuwei Zhang
Whitney Morgan
Thomas Anderson
Jon Y Takemoto
Jixun Zhan
Utah State University · US

Funding

Chemoenzymatic synthesis of pradimicin analogues for novel antifungal and antivirR15AI089347 · NIAID · UTAH STATE UNIVERSITY · PI ZHAN, JIXUN · 2011 to 2011
$422k
NIAID NIH HHS R15 AI089347NIAID NIH HHS R15AI089347
6 · The paper itself

Abstract

Three key tailoring enzymes in pradimicin biosynthesis: PdmJ, PdmW, and PdmN, were investigated. PdmW was characterized as the C-6 hydroxylase by structural characterization of the corresponding product, 6-hydroxy-G-2A. The efficiencies of the C-5 and C-6 hydroxylations, catalyzed respectively by PdmJ and PdmW, were low when they were expressed individually with the early biosynthetic enzymes that form G-2A. When these two cytochrome P450 enzymes were co-expressed, a dihydroxylated product, 5,6-dihydroxy-G-2A, was efficiently produced, indicating that these two enzymes work synergistically in pradimicin biosynthesis. Heterologously expressed PdmN in Streptomyces coelicolor CH999 converted G-2A to JX137a by ligating a unit of D-alanine to the carboxyl group. PdmN has relaxed substrate specificity toward both amino acid donors and acceptors. Through combinatorial biosynthesis, a series of new pradimicin analogues were produced.

Indexed as

AnthracyclinesCytochrome P-450 Enzyme SystemMolecular ConformationPradimicins and BenanomicinsAnthracyclinesCytochrome P-450 Enzyme Systempradimicin NPradimicins and Benanomicinscombinatorial biosynthesiscytochrome P450 hydroxylasepolyketidespradimicinsynergistic actions

Identifiers

PMID25155298
PMCPMC4214279
OpenAlexW2049759576

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.