ArticleG3 (Bethesda, Md.)2014
De novo assembly and annotation of the transcriptome of the agricultural weed Ipomoea purpurea uncovers gene expression changes associated with herbicide resistance.
Article in G3 (Bethesda, Md.), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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Who cites it
20 citing papers in PubMed.
- Weed biology and management in the multi-omics era: Progress and perspectives.Plant communications · 2024Review
- Yeast of Eden: microbial resistance to glyphosate from a yeast perspective.Current genetics · 2023Review
- A high diversity of non-target site resistance mechanisms to acetolactate-synthase (ALS) inhibiting herbicides has evolved within and among field populations of common ragweed (Ambrosia artemisiifolia L.).BMC plant biology · 2023Article
- Transcriptomic analysis of Amaranthus retroflex resistant to PPO-inhibitory herbicides.PloS one · 2023Article
- Evolution of weedy giant ragweed (Ecology and evolution · 2022Article
- Article
- Functional study ofFrontiers in plant science · 2022Article
- Article
- Adaptive and maladaptive expression plasticity underlying herbicide resistance in an agricultural weed.Evolution letters · 2021Article
- The Genetic Architecture of Emerging Fungicide Resistance in Populations of a Global Wheat Pathogen.Genome biology and evolution · 2020Article
- Parallel and nonparallel genomic responses contribute to herbicide resistance in Ipomoea purpurea, a common agricultural weed.PLoS genetics · 2020Article
- Non-target site-based resistance to tribenuron-methyl and essential involved genes in Myosoton aquaticum (L.).BMC plant biology · 2018Article
- Transcriptomic changes in Echinochloa colona in response to treatment with the herbicide imazamox.Planta · 2018Article
- De novo transcriptome assembly analysis of weed Apera spica-venti from seven tissues and growth stages.BMC genomics · 2017Article
- Transcriptome Profiling to Identify Genes Involved in Mesosulfuron-Methyl Resistance inFrontiers in plant science · 2017Article
- High-resolution transcript profiling reveals shoot abscission process of spruce dwarf mistletoe Arceuthobium sichuanense in response to ethephon.Scientific reports · 2016Article
- Article
- Article
- Genome-Wide Transcriptional Profiling and Metabolic Analysis Uncover Multiple Molecular Responses of the Grass Species Lolium perenne Under Low-Intensity Xenobiotic Stress.Frontiers in plant science · 2015Article
- Whole Transcriptome Analysis Provides Insights into Molecular Mechanisms for Molting in Litopenaeus vannamei.PloS one · 2015Article
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2 authors.
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Abstract
Human-mediated selection can lead to rapid evolution in very short time scales, and the evolution of herbicide resistance in agricultural weeds is an excellent example of this phenomenon. The common morning glory, Ipomoea purpurea, is resistant to the herbicide glyphosate, but genetic investigations of this trait have been hampered by the lack of genomic resources for this species. Here, we present the annotated transcriptome of the common morning glory, Ipomoea purpurea, along with an examination of whole genome expression profiling to assess potential gene expression differences between three artificially selected herbicide resistant lines and three susceptible lines. The assembled Ipomoea transcriptome reported in this work contains 65,459 assembled transcripts, ~28,000 of which were functionally annotated by assignment to Gene Ontology categories. Our RNA-seq survey using this reference transcriptome identified 19 differentially expressed genes associated with resistance-one of which, a cytochrome P450, belongs to a large plant family of genes involved in xenobiotic detoxification. The differentially expressed genes also broadly implicated receptor-like kinases, which were down-regulated in the resistant lines, and other growth and defense genes, which were up-regulated in resistant lines. Interestingly, the target of glyphosate-EPSP synthase-was not overexpressed in the resistant Ipomoea lines as in other glyphosate resistant weeds. Overall, this work identifies potential candidate resistance loci for future investigations and dramatically increases genomic resources for this species. The assembled transcriptome presented herein will also provide a valuable resource to the Ipomoea community, as well as to those interested in utilizing the close relationship between the Convolvulaceae and the Solanaceae for phylogenetic and comparative genomics examinations.
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