ArticleG3 (Bethesda, Md.)2014
Complete plastome sequences from Glycine syndetika and six additional perennial wild relatives of soybean.
Article in G3 (Bethesda, Md.), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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Who cites it
15 citing papers in PubMed.
- Plastome evolution and phylogenomics of Glycine (Leguminosae: Papilionoideae).BMC plant biology · 2026Article
- Comprehensive analysis of the chloroplast genome in Cannabis sativa L. reveals variations in simple sequence repeats among cultivars.Scientific reports · 2026Article
- The first complete chloroplast genome ofMitochondrial DNA. Part B, Resources · 2025Article
- The complete plastid genome ofMitochondrial DNA. Part B, Resources · 2024Article
- Phylogenomics of the genus Glycine sheds light on polyploid evolution and life-strategy transition.Nature plants · 2022Article
- Comparative chloroplast genome analyses of Avena: insights into evolutionary dynamics and phylogeny.BMC plant biology · 2020Article
- Performance of Mapping Approaches for Whole-Genome Bisulfite Sequencing Data in Crop Plants.Frontiers in plant science · 2020Article
- Genetic Diversity and Phylogenetic Relationships of Annual and PerennialG3 (Bethesda, Md.) · 2019Article
- Article
- The complete chloroplast genome sequence of Epipremnum aureum and its comparative analysis among eight Araceae species.PloS one · 2018Article
- The evolutionary fate of the chloroplast and nuclear rps16 genes as revealed through the sequencing and comparative analyses of four novel legume chloroplast genomes from Lupinus.DNA research : an international journal for rapid publication of reports on genes and genomes · 2017Article
- Comparative analysis of complete plastid genomes from wild soybean (Glycine soja) and nine other Glycine species.PloS one · 2017Article
- Chloroplast genomes: diversity, evolution, and applications in genetic engineering.Genome biology · 2016Review
- Genomics of crop wild relatives: expanding the gene pool for crop improvement.Plant biotechnology journal · 2016Review
- Data-driven guidelines for phylogenomic analyses using SNP data.Applications in plant sciencesArticle
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Authors and funding
5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Organelle sequences have a long history of utility in phylogenetic analyses. Chloroplast sequences when combined with nuclear data can help resolve relationships among flowering plant genera, and within genera incongruence can point to reticulate evolution. Plastome sequences are becoming plentiful because they are increasingly easier to obtain. Complete plastome sequences allow us to detect rare rearrangements and test the tempo of sequence evolution. Chloroplast sequences are generally considered a nuisance to be kept to a minimum in bacterial artificial chromosome libraries. Here, we sequenced two bacterial artificial chromosomes per species to generate complete plastome sequences from seven species. The plastome sequences from Glycine syndetika and six other perennial Glycine species are similar in arrangement and gene content to the previously published soybean plastome. Repetitive sequences were detected in high frequencies as in soybean, but further analysis showed that repeat sequence numbers are inflated. Previous chloroplast-based phylogenetic trees for perennial Glycine were incongruent with nuclear gene-based phylogenetic trees. We tested whether the hypothesis of introgression was supported by the complete plastomes. Alignment of complete plastome sequences and Bayesian analysis allowed us to date putative hybridization events supporting the hypothesis of introgression and chloroplast "capture."
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