Evidence map›Paper›PMID 25153801›Full record

ReviewBiochemistry2014

Interplay between oxygen and Fe-S cluster biogenesis: insights from the Suf pathway.

Eric S Boyd, Khaleh M Thomas, Yuyuan Dai, Jeff M Boyd, F Wayne Outten

Abstract readReview
In one paragraph

Review in Biochemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 81 papers.

0numbers the graph read from it
0cells of the map it votes in
81citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

81 citing papers in PubMed, 149 citations in OpenAlex.

  1. Propionate oxidation byApplied and environmental microbiology · 2026
    Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. A minimal SufBMicrobiology spectrum · 2025
    Article
  7. Article
  8. Targeting macro- and micro-nutrient regulation of HNeurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2025
    Review
  9. SmsB-SmsC machinery inApplied and environmental microbiology · 2025
    Article
  10. Article
  11. RadicalNature catalysis · 2025
    Article
  12. Article
  13. Article
  14. Small RNA OxyS induces resistance to aminoglycosides during oxidative stress by controlling Fe-S cluster biogenesis inProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  15. Review
  16. Metalloproteomics Reveals Multi-Level Stress Response inInternational journal of molecular sciences · 2024
    Article
  17. Article
  18. Article
  19. Article
  20. Article

21 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Eric S BoydDepartment of Microbiology and Immunology, Montana State University , 109 Lewis Hall, Bozeman, Montana 59717, United States.
Khaleh M Thomas
Yuyuan Dai
Jeff M Boyd
F Wayne Outten
University of South Carolina Sumter · USMontana State University · USRutgers, The State University of New Jersey · US

Funding

Characterization of the Suf Fe-S Cluster Biosynthesis Pathway Under StressR01GM081706 · NIGMS · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI OUTTEN, FRANKLIN WAYNE · 2007 to 2011
$1.1M
NIGMS NIH HHS GM81706
6 · The paper itself

Abstract

Iron-sulfur (Fe-S) cluster metalloproteins conduct essential functions in nearly all contemporary forms of life. The nearly ubiquitous presence of Fe-S clusters and the fundamental requirement for Fe-S clusters in both aerobic and anaerobic Archaea, Bacteria, and Eukarya suggest that these clusters were likely integrated into central metabolic pathways early in the evolution of life prior to the widespread oxidation of Earth's atmosphere. Intriguingly, Fe-S cluster-dependent metabolism is sensitive to disruption by oxygen because of the decreased bioavailability of ferric iron as well as direct oxidation of sulfur trafficking intermediates and Fe-S clusters by reactive oxygen species. This fact, coupled with the ubiquity of Fe-S clusters in aerobic organisms, suggests that organisms evolved with mechanisms that facilitate the biogenesis and use of these essential cofactors in the presence of oxygen, which gradually began to accumulate around 2.5 billion years ago as oxygenic photosynthesis proliferated and reduced minerals that buffered against oxidation were depleted. This review highlights the most ancient of the Fe-S cluster biogenesis pathways, the Suf system, which likely was present in early anaerobic forms of life. Herein, we use the evolution of the Suf pathway to assess the relationships between the biochemical functions and physiological roles of Suf proteins, with an emphasis on the selective pressure of oxygen toxicity. Our analysis suggests that diversification into oxygen-containing environments disrupted iron and sulfur metabolism and was a main driving force in the acquisition of accessory Suf proteins (such as SufD, SufE, and SufS) by the core SufB-SufC scaffold complex. This analysis provides a new framework for the study of Fe-S cluster biogenesis pathways and Fe-S cluster-containing metalloenzymes and their complicated patterns of divergence in response to oxygen.

Indexed as

Adenosine TriphosphatasesCarrier ProteinsEscherichia coli ProteinsIron-Sulfur ProteinsMetabolic Networks and PathwaysMethanosarcinaModels, MolecularOperonOxygenPhylogenyProtein ConformationAdenosine TriphosphatasesCarrier ProteinsEscherichia coli ProteinsIron-Sulfur ProteinsOxygenSufB protein, E coliSufC protein, E coliSufD protein, E coliSuf E protein, E coli

Identifiers

PMID25153801
PMCPMC4172210
OpenAlexW2080658804

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.