Evidence map›Paper›PMID 25153632›Full record

ArticleInternational journal of molecular sciences2014

Polymorphism of the flap endonuclease 1 gene in keratoconus and Fuchs endothelial corneal dystrophy.

Katarzyna A Wojcik, Ewelina Synowiec, Piotr Polakowski, Sylwester Głowacki, Justyna Izdebska, Sophie Lloyd, Dieter Galea, Janusz Blasiak, Jerzy Szaflik, Jacek P Szaflik

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 21 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Diseases of the corneal endothelium.Experimental eye research · 2021
    Review
  5. Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Genomic strategies to understand causes of keratoconus.Molecular genetics and genomics : MGG · 2017
    Review
  12. Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 3 countries.

Katarzyna A WojcikDepartment of Molecular Genetics, University of Lodz, Pomorska 141/143, Lodz 90-236, Poland. kwojcik@biol.uni.lodz.pl.
Ewelina SynowiecDepartment of Molecular Genetics, University of Lodz, Pomorska 141/143, Lodz 90-236, Poland. ewelinas@biol.uni.lodz.pl.
Piotr PolakowskiDepartment of Ophthalmology, Medical University of Warsaw, SPKSO Ophthalmic Hospital, Sierakowskiego 13, Warsaw 03-709, Poland. polakowp@gmail.com.
Sylwester GłowackiDepartment of Molecular Genetics, University of Lodz, Pomorska 141/143, Lodz 90-236, Poland. sglowa@biol.uni.lodz.pl.
Justyna IzdebskaDepartment of Ophthalmology, Medical University of Warsaw, SPKSO Ophthalmic Hospital, Sierakowskiego 13, Warsaw 03-709, Poland. justyna_izdebska@yahoo.es.
Sophie LloydDepartment of Molecular Genetics, University of Lodz, Pomorska 141/143, Lodz 90-236, Poland. lloydsophieanne@gmail.com.
Dieter GaleaDepartment of Molecular Genetics, University of Lodz, Pomorska 141/143, Lodz 90-236, Poland. dietergalea@gmail.com.
Janusz BlasiakDepartment of Molecular Genetics, University of Lodz, Pomorska 141/143, Lodz 90-236, Poland. jblasiak@biol.uni.lodz.pl.
Jerzy SzaflikDepartment of Ophthalmology, Medical University of Warsaw, SPKSO Ophthalmic Hospital, Sierakowskiego 13, Warsaw 03-709, Poland. szaflik@szaflik.pl.
Jacek P SzaflikDepartment of Ophthalmology, Medical University of Warsaw, SPKSO Ophthalmic Hospital, Sierakowskiego 13, Warsaw 03-709, Poland. szaflik@ophthalmology.pl.
Medical University of Warsaw · PLUniversity of Łódź · PLUniversity of Malta · MT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Oxidative stress is implicated in the pathogenesis of many diseases, including serious ocular diseases, keratoconus (KC) and Fuchs endothelial corneal dystrophy (FECD). Flap endonuclease 1 (FEN1) plays an important role in the repair of oxidative DNA damage in the base excision repair pathway. We determined the association between two single nucleotide polymorphisms (SNPs), c.-441G>A (rs174538) and g.61564299G>T (rs4246215), in the FEN1 gene and the occurrence of KC and FECD. This study involved 279 patients with KC, 225 patients with FECD and 322 control individuals. Polymerase chain reaction (PCR) and length polymorphism restriction fragment analysis (RFLP) were applied. The T/T genotype of the g.61564299G>T polymorphism was associated with an increased occurrence of KC and FECD. There was no association between the c.-441G>A polymorphism and either disease. However, the GG haplotype of both polymorphisms was observed more frequently and the GT haplotype less frequently in the KC group than the control. The AG haplotype was associated with increased FECD occurrence. Our findings suggest that the g.61564299G>T and c.-441G>A polymorphisms in the FEN1 gene may modulate the risk of keratoconus and Fuchs endothelial corneal dystrophy.

Indexed as

Flap EndonucleasesFuchs' Endothelial DystrophyHaplotypesKeratoconusPolymorphism, GeneticPolymorphism, Restriction Fragment LengthPolymorphism, Single NucleotideFlap Endonucleases

Identifiers

PMID25153632
PMCPMC4159882
OpenAlexW1987348499

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.