Evidence map›Paper›PMID 25153467›Full record

ArticleInternational journal of environmental research and public health2014

Practical barriers and ethical challenges in genetic data sharing.

Claire L Simpson, Aaron J Goldenberg, Rob Culverhouse, Denise Daley, Robert P Igo, Gail P Jarvik, Diptasri M Mandal, Deborah Mascalzoni, Courtney Gray Montgomery, Brandon Pierce and 4 more

Abstract read
In one paragraph

Article in International journal of environmental research and public health, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Article
  6. "You want the right amount of oversight": interviews with data access committee members and experts on genomic data access.Genetics in medicine : official journal of the American College of Medical Genetics · 2016
    Article
  7. Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Claire L SimpsonComputational and Statistical Genomics Branch, National Human Genome Research Institute, Baltimore, MD 21224, USA. claire.simpson@nih.gov.
Aaron J GoldenbergDepartment of Bioethics, Case Western Reserve University, Cleveland, OH 44106, USA. aaron.goldenberg@case.edu.
Rob CulverhouseDepartment of Internal Medicine, Washington University in St. Louis, St. Louis, MO 63110, USA. rculverh@dom.wustl.edu.
Denise DaleyDepartment of Medicine, University of British Columbia, Vancouver, BC V6Z 1Y6, Canada. denise.daley@hli.ubc.ca.
Robert P IgoComputational and Statistical Genomics Branch, National Human Genome Research Institute, Baltimore, MD 21224, USA. rpi@case.edu.
Gail P JarvikDepartments of Medicine (Medical Genetics) and Genome Sciences, University of Washington, Seattle, WA 98195, USA. gjarvik@medicine.washington.edu.
Diptasri M MandalDepartment of Genetics, Louisiana State University Health Sciences Center, New Orleans, LA 70112, USA. dmanda@lsuhsc.edu.
Deborah MascalzoniEURAC Institute of Genetic Medicine, Bolzano 39100, Italy. deborah.mascalzoni@eurac.edu.
Courtney Gray MontgomeryOklahoma Medical Research Foundation, Oklahoma City, OK 73104, USA. courtney-montgomery@omrf.org.
Brandon PierceComputational and Statistical Genomics Branch, National Human Genome Research Institute, Baltimore, MD 21224, USA. bpierce@health.bsd.uchicago.edu.
Rosemarie PlaetkeComputational and Statistical Genomics Branch, National Human Genome Research Institute, Baltimore, MD 21224, USA. rplaetke@alaska.edu.
Sanjay SheteComputational and Statistical Genomics Branch, National Human Genome Research Institute, Baltimore, MD 21224, USA. aaron.goldenberg@case.edu.
Katrina A B GoddardComputational and Statistical Genomics Branch, National Human Genome Research Institute, Baltimore, MD 21224, USA. rculverh@dom.wustl.edu.
Catherine M SteinDepartment of Epidemiology & Biostatistics, Case Western Reserve University, Cleveland, OH 44106, USA. cmj7@case.edu.

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Scott Kopetz · 1985 to 2026
$290.8M
Genetic Epidemiology of Complex TraitsZIAHG200327 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI BAILEY-WILSON, JOAN ELLEN · 2009 to 2022
$10.5M
Development and Use of Network Infrastructure for High-Throughput GWA StudiesU01HG004610 · NHGRI · KAISER FOUNDATION HEALTH PLAN OF WASHINGTON · PI LARSON, ERIC B · 2007 to 2010
$4.2M
NCI NIH HHS P30 CA016672NHGRI NIH HHS P01 HG004610NHGRI NIH HHS U01 HG004610
6 · The paper itself

Abstract

The underlying ethos of dbGaP is that access to these data by secondary data analysts facilitates advancement of science. NIH has required that genome-wide association study data be deposited in the Database of Genotypes and Phenotypes (dbGaP) since 2003. In 2013, a proposed updated policy extended this requirement to next-generation sequencing data. However, recent literature and anecdotal reports suggest lingering logistical and ethical concerns about subject identifiability, informed consent, publication embargo enforcement, and difficulty in accessing dbGaP data. We surveyed the International Genetic Epidemiology Society (IGES) membership about their experiences. One hundred and seventy five (175) individuals completed the survey, a response rate of 27%. Of respondents who received data from dbGaP (43%), only 32% perceived the application process as easy but most (75%) received data within five months. Remaining challenges include difficulty in identifying an institutional signing official and an overlong application process. Only 24% of respondents had contributed data to dbGaP. Of these, 31% reported local IRB restrictions on data release; an additional 15% had to reconsent study participants before depositing data. The majority of respondents (56%) disagreed that the publication embargo period was sufficient. In response, we recommend longer embargo periods and use of varied data-sharing models rather than a one-size-fits-all approach.

Indexed as

Databases as TopicGenome-Wide Association StudyAttitudeHumansInformation DisseminationInformed ConsentPerceptionSurveys and Questionnaires

Identifiers

PMID25153467
PMCPMC4143867

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.