Evidence map›Paper›PMID 25153316›Full record

ArticlePloS one2014

Genome sequence analysis of in vitro and in vivo phenotypes of Bunyamwera and Ngari virus isolates from northern Kenya.

Collins Odhiambo, Marietjie Venter, Konongoi Limbaso, Robert Swanepoel, Rosemary Sang

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Identification of Bunyamwera and Possible OtherThe American journal of tropical medicine and hygiene · 2020
    Article
  6. Review
  7. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Collins OdhiamboHuman Health Division, International Centre of Insect Physiology and Ecology, Nairobi, Kenya; Zoonoses Research Unit, Department Medical Virology, University of Pretoria, Pretoria, South Africa; Centre for Virus Research, Kenya Medical Research Institute, Nairobi, Kenya.
Marietjie VenterZoonoses Research Unit, Department Medical Virology, University of Pretoria, Pretoria, South Africa.
Konongoi LimbasoCentre for Virus Research, Kenya Medical Research Institute, Nairobi, Kenya.
Robert SwanepoelZoonoses Research Unit, Department Medical Virology, University of Pretoria, Pretoria, South Africa.
Rosemary SangHuman Health Division, International Centre of Insect Physiology and Ecology, Nairobi, Kenya; Centre for Virus Research, Kenya Medical Research Institute, Nairobi, Kenya; Division of Emerging Infectious Disease, United States Army Medical Research Unit, Nairobi, Kenya.
International Centre of Insect Physiology and Ecology · KEUniversity of Pretoria · ZAKenya Medical Research Institute · KE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Biological phenotypes of tri-segmented arboviruses display characteristics that map to mutation/s in the S, M or L segments of the genome. Plaque variants have been characterized for other viruses displaying varied phenotypes including attenuation in growth and/or pathogenesis. In order to characterize variants of Bunyamwera and Ngari viruses, we isolated individual plaque size variants; small plaque (SP) and large plaque (LP) and determined in vitro growth properties and in vivo pathogenesis in suckling mice. We performed gene sequencing to identify mutations that may be responsible for the observed phenotype. The LP generally replicated faster than the SP and the difference in growth rate was more pronounced in Bunyamwera virus isolates. Ngari virus isolates were more conserved with few point mutations compared to Bunyamwera virus isolates which displayed mutations in all three genome segments but majority were silent mutations. Contrary to expectation, the SP of Bunyamwera virus killed suckling mice significantly earlier than the LP. The LP attenuation may probably be due to a non-synonymous substitution (T858I) that mapped within the active site of the L protein. In this study, we identify natural mutations whose exact role in growth and pathogenesis need to be determined through site directed mutagenesis studies.

Indexed as

Genome, ViralAnimalsBunyamwera virusGenetic VariationHumansKenyaMicePhenotypeSequence Analysis, RNA

Identifiers

PMID25153316
PMCPMC4143288
OpenAlexW2164908962

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.