Evidence map›Paper›PMID 25153150›Full record

ArticlePloS one2014

Identification and characterization of germ cell genes expressed in the F9 testicular teratoma stem cell line.

Jun Tae Kwon, Sora Jin, Heejin Choi, Jihye Kim, Juri Jeong, Jaehwan Kim, Youil Kim, Byung-Nam Cho, Chunghee Cho

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.7field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
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  4. Tex13a Optimizes Sperm MotilityFrontiers in cell and developmental biology · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Jun Tae KwonSchool of Life Sciences, Gwangju Institute of Science and Technology, Gwangju, Korea.
Sora JinSchool of Life Sciences, Gwangju Institute of Science and Technology, Gwangju, Korea.
Heejin ChoiSchool of Life Sciences, Gwangju Institute of Science and Technology, Gwangju, Korea.
Jihye KimSchool of Life Sciences, Gwangju Institute of Science and Technology, Gwangju, Korea.
Juri JeongSchool of Life Sciences, Gwangju Institute of Science and Technology, Gwangju, Korea.
Jaehwan KimSchool of Life Sciences, Gwangju Institute of Science and Technology, Gwangju, Korea.
Youil KimSchool of Life Sciences, Gwangju Institute of Science and Technology, Gwangju, Korea.
Byung-Nam ChoDepartment of Biology, The Catholic University of Korea, Bucheon, Korea.
Chunghee ChoSchool of Life Sciences, Gwangju Institute of Science and Technology, Gwangju, Korea.
Gwangju Institute of Science and Technology · KRCatholic University of Korea · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The F9 cell line, which was derived from a mouse testicular teratoma that originated from pluripotent germ cells, has been used as a model for differentiation. However, it is largely unknown whether F9 cells possess the characteristics of male germ cells. In the present study, we investigated spermatogenic stage- and cell type-specific gene expression in F9 cells. Analysis of previous microarray data showed that a large number of stage-regulated germ cell genes are expressed in F9 cells. Specifically, genes that are prominently expressed in spermatogonia and have transcriptional regulatory functions appear to be enriched in F9 cells. Our in silico and in vitro analyses identified several germ cell-specific or -predominant genes that are expressed in F9 cells. Among them, strong promoter activities were observed in the regions upstream of the spermatogonial genes, Dmrt1 (doublesex and mab-3 related transcription factor 1), Stra8 (stimulated by retinoic acid gene 8) and Tex13 (testis expressed gene 13), in F9 cells. A detailed analysis of the Tex13 promoter allowed us to identify an enhancer and a region that is implicated in germ cell-specificity. We also found that Tex13 expression is regulated by DNA methylation. Finally, analysis of GFP (green fluorescent protein) TEX13 localization revealed that the protein distributes heterogeneously in the cytoplasm and nucleus, suggesting that TEX13 shuttles between these two compartments. Taken together, our results demonstrate that F9 cells express numerous spermatogonial genes and could be used for transcriptional studies focusing on such genes. As an example of this, we use F9 cells to provide comprehensive expressional information about Tex13, and report that this gene appears to encode a germ cell-specific protein that functions in the nucleus during early spermatogenesis.

Indexed as

Gene Expression Regulation, NeoplasticAnimalsBiomarkersCell Line, TumorDNA MethylationGene Expression Regulation, DevelopmentalGerm CellsMaleMiceNIH 3T3 CellsPromoter Regions, GeneticTeratomaTesticular NeoplasmsTranscription FactorsBiomarkersTranscription Factors

Identifiers

PMID25153150
PMCPMC4143169
OpenAlexW1970263046

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.