Evidence map›Paper›PMID 25152353›Full record

ArticleGenome biology and evolution2014

Genomic organization, transcriptomic analysis, and functional characterization of avian α- and β-keratins in diverse feather forms.

Chen Siang Ng, Ping Wu, Wen-Lang Fan, Jie Yan, Chih-Kuan Chen, Yu-Ting Lai, Siao-Man Wu, Chi-Tang Mao, Jun-Jie Chen, Mei-Yeh Jade Lu and 5 more

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 75 citations in OpenAlex.

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  17. Regional specific differentiation of integumentary organs: SATB2 is involved in α- and β-keratin gene cluster switching in the chicken.Developmental dynamics : an official publication of the American Association of Anatomists · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 3 countries.

Chen Siang NgBiodiversity Research Center, Academia Sinica, Taipei, Taiwan cmchuong@med.usc.edu whli@gate.sinica.edu.tw.
Ping WuDepartment of Pathology, Keck School of Medicine, University of Southern California cmchuong@med.usc.edu whli@gate.sinica.edu.tw.
Wen-Lang FanBiodiversity Research Center, Academia Sinica, Taipei, Taiwan.
Jie YanDepartment of Pathology, Keck School of Medicine, University of Southern California Jiangsu Key Laboratory for Biodiversity and Biotechnology, College of Life Sciences, Nanjing Normal University, China.
Chih-Kuan ChenBiodiversity Research Center, Academia Sinica, Taipei, Taiwan Institute of Ecology and Evolutionary Biology, National Taiwan University, Taipei, Taiwan.
Yu-Ting LaiBiodiversity Research Center, Academia Sinica, Taipei, Taiwan.
Siao-Man WuBiodiversity Research Center, Academia Sinica, Taipei, Taiwan.
Chi-Tang MaoBiodiversity Research Center, Academia Sinica, Taipei, Taiwan Molecular Biology of Agricultural Sciences, Taiwan International Graduate Program, Academia Sinica, Taipei, Taiwan Graduate Institute of Biotechnology, National Chung Hsing University, Taichung, Taiwan.
Jun-Jie ChenBiodiversity Research Center, Academia Sinica, Taipei, Taiwan.
Mei-Yeh Jade LuBiodiversity Research Center, Academia Sinica, Taipei, Taiwan.
Meng-Ru HoBiodiversity Research Center, Academia Sinica, Taipei, Taiwan.
Randall B WidelitzDepartment of Pathology, Keck School of Medicine, University of Southern California.
Chih-Feng ChenDepartment of Animal Science, National Chung Hsing University, Taichung, Taiwan Center for the Integrative and Evolutionary Galliformes Genomics (iEGG Center), National Chung Hsing University, Taichung, Taiwan.
Cheng-Ming ChuongDepartment of Pathology, Keck School of Medicine, University of Southern California Center for the Integrative and Evolutionary Galliformes Genomics (iEGG Center), National Chung Hsing University, Taichung, Taiwan cmchuong@med.usc.edu whli@gate.sinica.edu.tw.
Wen-Hsiung LiBiodiversity Research Center, Academia Sinica, Taipei, Taiwan Department of Ecology and Evolution, University of Chicago cmchuong@med.usc.edu whli@gate.sinica.edu.tw.
Biodiversity Research Center, Academia Sinica · TWUniversity of Southern California · USNanjing Normal University · CNNational Chung Hsing University · TW

Funding

Re-Engineering Translational Research at the University of ChicagoUL1TR000430 · NCATS · UNIVERSITY OF CHICAGO · PI SOLWAY, JULIAN · 2012 to 2016
$20.2M
Size regulation of skin appendagesR01AR047364 · NIAMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Cheng-Ming Chuong · 2002 to 2026
$10.1M
LIW5R01AR042177 · NIAMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI CHUONG, CHENG-MING · 1995 to 2013
$5.7M
NCATS NIH HHS UL1 TR000430NIAMS NIH HHS AR 42177NIAMS NIH HHS AR 47364NIAMS NIH HHS R01 AR047364
6 · The paper itself

Abstract

Feathers are hallmark avian integument appendages, although they were also present on theropods. They are composed of flexible corneous materials made of α- and β-keratins, but their genomic organization and their functional roles in feathers have not been well studied. First, we made an exhaustive search of α- and β-keratin genes in the new chicken genome assembly (Galgal4). Then, using transcriptomic analysis, we studied α- and β-keratin gene expression patterns in five types of feather epidermis. The expression patterns of β-keratin genes were different in different feather types, whereas those of α-keratin genes were less variable. In addition, we obtained extensive α- and β-keratin mRNA in situ hybridization data, showing that α-keratins and β-keratins are preferentially expressed in different parts of the feather components. Together, our data suggest that feather morphological and structural diversity can largely be attributed to differential combinations of α- and β-keratin genes in different intrafeather regions and/or feather types from different body parts. The expression profiles provide new insights into the evolutionary origin and diversification of feathers. Finally, functional analysis using mutant chicken keratin forms based on those found in the human α-keratin mutation database led to abnormal phenotypes. This demonstrates that the chicken can be a convenient model for studying the molecular biology of human keratin-based diseases.

Indexed as

AnimalsAvian Proteinsbeta-KeratinsChickensEvolution, MolecularFeathersGene Expression ProfilingGenomicsHumansKeratinsMultigene FamilyPhylogenyAvian Proteinsbeta-KeratinsKeratinschickenevolutionfeatherin situ hybridizationkeratinRNA-seqskin appendagetranscriptomezebra finch

Identifiers

PMID25152353
PMCPMC4202321
OpenAlexW2162661769

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.