Evidence map›Paper›PMID 25152084›Full record

ArticleNature methods2014

Adenoviral vector DNA for accurate genome editing with engineered nucleases.

Maarten Holkers, Ignazio Maggio, Sara F D Henriques, Josephine M Janssen, Toni Cathomen, Manuel A F V Gonçalves

Abstract read
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In one paragraph

Article in Nature methods, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed
9.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed, 134 citations in OpenAlex.

  1. Review
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  9. Genome Editing Using Cas9 Ribonucleoprotein Is Effective for IntroducingInternational journal of molecular sciences · 2022
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  17. CRISPR/Cas9 revitalizes adoptive T-cell therapy for cancer immunotherapy.Journal of experimental & clinical cancer research : CR · 2021
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18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Maarten Holkers1] Department of Molecular Cell Biology, Leiden University Medical Center, Leiden, the Netherlands. [2].
Ignazio Maggio1] Department of Molecular Cell Biology, Leiden University Medical Center, Leiden, the Netherlands. [2].
Sara F D Henriques1] Department of Molecular Cell Biology, Leiden University Medical Center, Leiden, the Netherlands. [2] Departamento de Biologia Animal, Faculdade de Ciências da Universidade de Lisboa, Lisbon, Portugal.
Josephine M JanssenDepartment of Molecular Cell Biology, Leiden University Medical Center, Leiden, the Netherlands.
Toni Cathomen1] Institute for Cell and Gene Therapy, University Medical Center Freiburg, Freiburg, Germany. [2] Center for Chronic Immunodeficiency, University Medical Center Freiburg, Freiburg, Germany.
Manuel A F V GonçalvesDepartment of Molecular Cell Biology, Leiden University Medical Center, Leiden, the Netherlands.
Leiden University Medical Center · NLUniversity Medical Center Freiburg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Engineered sequence-specific nucleases and donor DNA templates can be customized to edit mammalian genomes via the homologous recombination (HR) pathway. Here we report that the nature of the donor DNA greatly affects the specificity and accuracy of the editing process following site-specific genomic cleavage by transcription activator-like effector nucleases (TALENs) and clustered, regularly interspaced, short palindromic repeats (CRISPR)-Cas9 nucleases. By applying these designer nucleases together with donor DNA delivered as protein-capped adenoviral vector (AdV), free-ended integrase-defective lentiviral vector or nonviral vector templates, we found that the vast majority of AdV-modified human cells underwent scarless homology-directed genome editing. In contrast, a significant proportion of cells exposed to free-ended or to covalently closed HR substrates were subjected to random and illegitimate recombination events. These findings are particularly relevant for genome engineering approaches aiming at high-fidelity genetic modification of human cells.

Indexed as

AdenoviridaeCell LineCell SeparationDeoxyribonucleasesDNADNA, ViralGene TargetingGenetic EngineeringGenomeHEK293 CellsHeLa CellsHumansPolymerase Chain ReactionRecombination, GeneticRepetitive Sequences, Nucleic AcidReproducibility of ResultsDeoxyribonucleasesDNADNA, Viral

Identifiers

PMID25152084
OpenAlexW2034020839

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.