ArticleThe ISME journal2015
Biotic interactions and temporal dynamics of the human gastrointestinal microbiota.
Article in The ISME journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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Who cites it
21 citing papers in PubMed.
- Responses of Ileal and Fecal Microbiota to Withdrawal of Pancreatic Enzyme Replacement Therapy in a Porcine Model of Exocrine Pancreatic Insufficiency.International journal of molecular sciences · 2022Article
- Temporal Alignment of Longitudinal Microbiome Data.Frontiers in microbiology · 2022Article
- Challenges, Strategies, and Perspectives for Reference-Independent Longitudinal Multi-Omic Microbiome Studies.Frontiers in genetics · 2021Article
- Gut-host Crosstalk: Methodological and Computational Challenges.Digestive diseases and sciences · 2020Review
- Use and abuse of correlation analyses in microbial ecology.The ISME journal · 2019Review
- Diet-microbiome-disease: Investigating diet's influence on infectious disease resistance through alteration of the gut microbiome.PLoS pathogens · 2019Review
- Timescales of gut microbiome dynamics.Current opinion in microbiology · 2019Review
- Detecting interaction networks in the human microbiome with conditional Granger causality.PLoS computational biology · 2019Article
- Stationary moments, diffusion limits, and extinction times for logistic growth with random catastrophes.Journal of theoretical biology · 2018Article
- Dynamics of microbial populations mediating biogeochemical cycling in a freshwater lake.Microbiome · 2018Article
- A multivariate distance-based analytic framework for microbial interdependence association test in longitudinal study.Genetic epidemiology · 2017Article
- Statistical analysis of co-occurrence patterns in microbial presence-absence datasets.PloS one · 2017Article
- Diet-Dependent Modular Dynamic Interactions of the Equine Cecal Microbiota.Microbes and environments · 2016Article
- Host Gut Motility Promotes Competitive Exclusion within a Model Intestinal Microbiota.PLoS biology · 2016Article
- Vertebrate bacterial gut diversity: size also matters.BMC ecology · 2016Article
- Bacterial Communities: Interactions to Scale.Frontiers in microbiology · 2016Review
- Ecology of bacteria in the human gastrointestinal tract--identification of keystone and foundation taxa.Microbiome · 2015Article
- Quantitative analysis of commensal Escherichia coli populations reveals host-specific enterotypes at the intra-species level.MicrobiologyOpen · 2015Article
- Inference of Network Dynamics and Metabolic Interactions in the Gut Microbiome.PLoS computational biology · 2015Article
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Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The human gastrointestinal (GI) microbiota is important to human health and imbalances or shifts in the gut microbial community have been linked to many diseases. Most studies of the GI microbiota only capture snapshots of this dynamic community at one or a few time points. Although this is valuable in terms of providing knowledge of community composition and variability between individuals, it does not provide the foundation for going beyond descriptive studies and toward truly predictive ecological models. In order to achieve this goal, we need longitudinal data of appropriate temporal and taxonomic resolution, so that established time series analysis tools for identifying and quantifying putative interactions among community members can be used. Here, we present new analyses of existing data to illustrate the potential usefulness of this approach. We discuss challenges related to sampling and data processing, as well as analytical approaches and considerations for future studies of the GI microbiota and other complex microbial systems.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.