ArticleEmerging infectious diseases2014
Genomic epidemiology of Salmonella enterica serotype Enteritidis based on population structure of prevalent lineages.
Article in Emerging infectious diseases, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
58 citing papers in PubMed.
- One Health genomics reveals niche-specific lineage replacement inNational science review · 2026Article
- Probing Genomic Diversity ofFoods (Basel, Switzerland) · 2026Article
- Transmission of Salmonella clones between different animal species in a horse and cattle breeding region in Japan.Scientific reports · 2026Article
- Phylodynamic analysis ofMicrobial genomics · 2026Article
- Investigating the dynamics ofFrontiers in veterinary science · 2026Article
- Integrating serotyping, MLST, and phenotypic data: decoding the evolutionary drivers ofApplied and environmental microbiology · 2025Article
- Temporal reconstruction of aMicrobial genomics · 2025Article
- Molecular epidemiology ofAntimicrobial agents and chemotherapy · 2025Article
- Eugenol accelerates intestinal stem cell regeneration to protect the intestinal barrier integrity through inhibiting JAK2/STAT3 signaling pathway in Salmonella enteritidis-challenged broiler chicks.Journal of animal science and biotechnology · 2025Article
- Evaluation of Genomic Typing Methods in thePathogens (Basel, Switzerland) · 2023Article
- Geography shapes the genomics and antimicrobial resistance of Salmonella enterica Serovar Enteritidis isolated from humans.Scientific reports · 2023Article
- Evaluation of whole and core genome multilocus sequence typing allele schemes forFrontiers in microbiology · 2023Article
- Large-scale comparative genomics to refine the organization of the globalMicrobial genomics · 2022Article
- Article
- Genetic characterization ofAccess microbiology · 2022Article
- Genomic Comparison of Eight Closed Genomes of Multidrug-ResistantFrontiers in microbiology · 2022Article
- Whole-Genome Analysis of Multidrug-ResistantPathogens (Basel, Switzerland) · 2021Article
- Global spread of Salmonella Enteritidis via centralized sourcing and international trade of poultry breeding stocks.Nature communications · 2021Article
- Elucidation of global and national genomic epidemiology ofMicrobial genomics · 2021Article
- High-Resolution Genomic Comparisons withinApplied and environmental microbiology · 2021Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
14 authors.
Funding
Abstract
Salmonella enterica serotype Enteritidis is one of the most commonly reported causes of human salmonellosis. Its low genetic diversity, measured by fingerprinting methods, has made subtyping a challenge. We used whole-genome sequencing to characterize 125 S. enterica Enteritidis and 3 S. enterica serotype Nitra strains. Single-nucleotide polymorphisms were filtered to identify 4,887 reliable loci that distinguished all isolates from each other. Our whole-genome single-nucleotide polymorphism typing approach was robust for S. enterica Enteritidis subtyping with combined data for different strains from 2 different sequencing platforms. Five major genetic lineages were recognized, which revealed possible patterns of geographic and epidemiologic distribution. Analyses on the population dynamics and evolutionary history estimated that major lineages emerged during the 17th-18th centuries and diversified during the 1920s and 1950s.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.